Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g680 ATGAAAGGCAAAGGTGGTTGGAGCCCCAAGTTAGAATTGCCGCTTCTCTTCCTCTCATGGTCCCTTTTCTTCCTCGCTGGCCTCTTTGGGTCCATGCTGTTCTCTCAGGATGTAAATGGAGTTCGATCACCGCCGAGATTGCTTGAATCGGTGGAGGAGGAGTACAGTTCGATGCCGCATGGAGAGACTGGAGAGAGTTCTGTTGATTTGATCCCATTTCAGGTCTTGAGTTGGAAACCACGAGCTCGCTATTTTCCTCACTTTGCAACTGCAGAACAATGCCAAAGCATAATTGAAATGGCAAAGTCAGGCCTTAGTCCATCAACCCTGGTTTTGCGAAAGGGAGAAACTGAAGAGAGCACTAAGGGAATTAGAACTAGTTCAGGTACATTTATTAGTGCATCAGAAGACAAAACTGGAATTCTGGACTTCATTGAGCGAAAAATTGCTAAGGCTACAATGATTCCAAGAAACCATGGAGAGGTATTCAATATTCTGAGGTATGAGATTGGGCAGAGGTATAATTCACATTATGATGCAATCAGCCCTGCTGAATATGGACTACAAACAAGCCAAAGGATTGCTTCCTTCTTGTTGTATCTATCTGATGTAGAAGAAGGTGGAGAAACTATGTTTCCTTTTGAGCATGACTTGAATATCAATACGTTCAATTCCAGAAAATGCATTGGCTTGAAAGTGAAGCCACGAAGAGGGGATGGACTTTTATTTTATTCAGTGTTTCCAAATGGCACAATTGATTGGACATCTATGCATGGAAGCTGTCCAGTGATTGAAGGGGAGAAGTGGGTGGCTACAAAGTGGATCAGAGATGAACAACAAGAAGACTAA 849 43.11 MKGKGGWSPKLELPLLFLSWSLFFLAGLFGSMLFSQDVNGVRSPPRLLESVEEEYSSMPHGETGESSVDLIPFQVLSWKPRARYFPHFATAEQCQSIIEMAKSGLSPSTLVLRKGETEESTKGIRTSSGTFISASEDKTGILDFIERKIAKATMIPRNHGEVFNILRYEIGQRYNSHYDAISPAEYGLQTSQRIASFLLYLSDVEEGGETMFPFEHDLNINTFNSRKCIGLKVKPRRGDGLLFYSVFPNGTIDWTSMHGSCPVIEGEKWVATKWIRDEQQED* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6975808 6984113 + Vvi3g680 Vvi3g680 784355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g680 282 Pfam 2OG-Fe(II) oxygenase superfamily 164 276 IPR044862 -
Vvi3g680 282 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 158 277 IPR005123 -
Vvi3g680 282 SMART p4hc 80 276 IPR006620 GO:0005506|GO:0016705|GO:0031418
Vvi3g680 282 Gene3D q2cbj1_9rhob like domain 73 276 - -
Vvi3g680 282 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 5 282 IPR045054 -
Vvi3g680 282 PANTHER TYPE 1 PROLY 4-HYDROXYLASE 5 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g680 K00472 P4HA; prolyl 4-hydroxylase [EC:1.14.11.2] - vvi:100266991 530.406
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g680 Vvi7g960 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007880 1 1 1 1 1 1 2 1 0 0 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 2 3 36