Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g681 ATGGCATTAGTGTTTTGTTGGTGGTGGTGCATTACTCAATTCCACATTAGTAATAAAGTGTTGAAAGAGACTGGTCAATCAACAGCAAATGCTCTTAACAAATTTACATCACAAATTAAGAAGCCCCCTCATCGGAAAACTTCTCCTATCAATTGGTTCCCACGGAAAAAGGTGGACTCCTATTTAAACAGGAAAATAAAACTGCTGCAGCAGGAAGTAGGTGGCATGAATTCAACTCTAGATGAGACTCTAGGCGATTCAAATCCTCATTACTCAAGAGTTTTGAGAGAAAAAATTGCAGCTAAAGAGGCAGCACAAAAGGCAATGGAGGCTTGGAAGGCCGCAATGGTGGAAGCATCTTGGTGTCGGATACTTAATGCAGCTAGGATCCAAAGCAAAGAAGCAGAAGCCCTGCTGTCTAAAGCTGAAAAGAGTGTTGCTGAAGCCTTTGAAGCAGCAACAGCTAAGGGTGTTGTCATGTATGATATGCCAAATTGCTCCCAAAAATCTTGTGAAATAGAAACATCCTCTTGTAATGGAGGAGGATCTACTACTCACACTGTTGCAGCATCCTTTGAAACTGCATTTGAGGTAGATAAGGAAGTAGCTGCCGCAGTTAAAACTGCATTTGTAAGGCTCGCACATTGCCCTTCATTTAGCAAAGATGAATTCAAAGATGTTCTATGGAAAATCAGCCAGAATCCAGATACAGAGCTTGAACTTGTTGACATTATGCTTGAAAGGATTAGATGTTTGAAGGAAGATGAGCTTGCTTCTCTTGCCACAATAGTTGCAACATGTGGATTAAATGCTGCCTTGGCTGAAGCAGAGAATAATAAGCTGCATGATCCAGATCCTGCCACTGATTATGCTGCTGGCCTGACTCTCAATTTTGCCAGAAGAATGTCTTCCTTCGGAACAGCAACAACAAAAACCTCAAGCATGCATTATTTCATGGATGGGCAGATGAAAAAGAAGAGAGCTGAGTCACAACTCCCAAGTCTAGGTGAGTGTTTGGTCAAGCACATGTCAAAGCTAGAAAGGGAGGTCCTAGAGGCAAAAAACACTAGAAAGAATGAGTCTAAAGTGAGATCTGGGGAAATCCCAGATAAATTTGATGATGGAAAGGGTGACTCAGATAACAATGTAACTCTGTTTGAGACTATTCCAGACTTGGGAAGTATTCTTGTAAAGCATTCTTCAAAGTTCGAGAAGGAGATTGAAGAGGGAAAAAAGAATTCTGGAGAACTGTTTGAAATGAATTGCAAGAATTTAGACAGTGATACAGCTTCATCTGAGGCTAAGAAAATGGAAATGCTGAAGGTGAAGGGAAATGACATGAACCAGAAGTCAGAGAATGCTGACCAGGTTAAATATTCTGTAGCTCGTAGAGAAGCAAGGGAGAAAGAGTTGCAAGAAGCATGGGGAGGCTTGAGCTTAGGGAATTCCATACGACCACATCTCTCAAAACTTGAACAAGATAAGGCTGCTTGGATTAAAGCTGAAGAGGAGGAAAGGAGGCAAGCTGTGAAAGAGTTATAA 1542 41.37 MALVFCWWWCITQFHISNKVLKETGQSTANALNKFTSQIKKPPHRKTSPINWFPRKKVDSYLNRKIKLLQQEVGGMNSTLDETLGDSNPHYSRVLREKIAAKEAAQKAMEAWKAAMVEASWCRILNAARIQSKEAEALLSKAEKSVAEAFEAATAKGVVMYDMPNCSQKSCEIETSSCNGGGSTTHTVAASFETAFEVDKEVAAAVKTAFVRLAHCPSFSKDEFKDVLWKISQNPDTELELVDIMLERIRCLKEDELASLATIVATCGLNAALAEAENNKLHDPDPATDYAAGLTLNFARRMSSFGTATTKTSSMHYFMDGQMKKKRAESQLPSLGECLVKHMSKLEREVLEAKNTRKNESKVRSGEIPDKFDDGKGDSDNNVTLFETIPDLGSILVKHSSKFEKEIEEGKKNSGELFEMNCKNLDSDTASSEAKKMEMLKVKGNDMNQKSENADQVKYSVARREAREKELQEAWGGLSLGNSIRPHLSKLEQDKAAWIKAEEEERRQAVKEL* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6987236 6990594 + Vvi3g681 Vvi3g681 784356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g681 513 PANTHER MYOSIN-2 HEAVY CHAIN-LIKE PROTEIN 240 438 - -
Vvi3g681 513 PANTHER MYOSIN-2 HEAVY CHAIN-LIKE PROTEIN 18 238 - -
Vvi3g681 513 PANTHER MYOSIN-2 HEAVY CHAIN-LIKE PROTEIN 445 510 - -
Vvi3g681 513 Coils Coil 125 152 - -
Vvi3g681 513 Coils Coil 343 363 - -
Vvi3g681 513 MobiDBLite consensus disorder prediction 353 379 - -
Vvi3g681 513 Coils Coil 488 508 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g681 - - - pvy:116118884 484.567
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g681 Blo02g00938 . . Bda08g00672 . . . . . . . . . . . . . . . . . . . . Cla10g01008 Cam10g1031 Cec10g1062 Cco10g1026 Clacu10g1048 Cmu10g1832 Cre10g1204 . . Cone3ag1018 . . . . . . . . . . Bpe05g00481 . . . Cmo04g00492 Cmo16g00350 . . . . Cpe14g00275 Cpe01g00412 Bhi11g01151 . . . . . . . . . . . . . Lsi03g01036 . . Cme07g02168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006087 2 6 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 39