Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g688 ATGGCAAACCAAGCGTCCTCATCCTCTACTGCGCTGGAAGTCCTAATCGAAGATGAAGAGTTCTTGTATGGAGCTGAATCGGGTTGGGTCGAGGCTCGTACCTCGTGCGATCACTTGGCTTCTCTGTCGTCCGATCTCGTACACATTCCCACTCCTGAAACTCCCTGCAACAGGTGCCATAACCCATCCGAAAATTGGTTATGTTTGTGCTGTAAGGAAGTTCTTTGCAGCCGTTTTGTAAACAAGCATATGCTTGAGCATTATCAGAAAGTAAACCATTGTTTGGCACTCAGCTACAGTGATTTATCGATTTGGTGTTTCTCATGCGATGCATATTTGGATGCTCAAGCGATTTTGCAACTCCATCCTGTTTATGAAACTGCATATATACTGAAATTTGGCCAGGCCCCTCCATTTCCAACCACAGATAATCAAGCAGAAGCTTCAACTTCAGGCAATTAA 462 44.81 MANQASSSSTALEVLIEDEEFLYGAESGWVEARTSCDHLASLSSDLVHIPTPETPCNRCHNPSENWLCLCCKEVLCSRFVNKHMLEHYQKVNHCLALSYSDLSIWCFSCDAYLDAQAILQLHPVYETAYILKFGQAPPFPTTDNQAEASTSGN* 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7055779 7059118 - Vvi3g688 Vvi3g688 784363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g688 153 SMART Zf_UBP_1 55 104 IPR001607 GO:0008270
Vvi3g688 153 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 115 IPR001607 GO:0008270
Vvi3g688 153 ProSiteProfiles Zinc finger UBP-type profile. 34 134 IPR001607 GO:0008270
Vvi3g688 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 137 IPR013083 -
Vvi3g688 153 PANTHER HISTONE DEACETYLASE-LIKE PROTEIN 1 148 - -
Vvi3g688 153 SUPERFAMILY RING/U-box 34 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g688 - - - vvi:100246442 326.635
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g688 . . . . . . Bma05g00656 . . . . . . . . . . . . . . . . . Cla10g01002 Cam10g1025 Cec10g1056 Cco10g1020 Clacu10g1042 Cmu10g1826 Cre10g1199 . . Cone3ag1022 . . . . . . . . . . . . . Sed13g0450 Cmo04g00487 . . . . . . Cpe01g00407 Bhi11g01143 Tan01g0644 Cmetu07g0339 . Hepe07g0422 Mch10g0452 . . . . . . . . . . . Cme07g02174
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011357 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29