Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g693 ATGAAGTTTATGAAGCTTGGATCAAAGCCAGATTCCTTTCAGACTGATGGAAACAGTGTTAGGTATGTGGCATCAGAGTTGGCAACTGACATTGTGGTTAATGTAGGGGAGGTGAAGTTTTATCTGCATAAGTTTCCATTACTGTCCAAGAGTGAGTGCTTGCAAAAATTGGTTGCAGCCACAAATGACGGAAACAGTGATGAAGTCCACATTCCTGATATTCCTGGCGGGCCCTCTGCCTTTGAGATATGTGCCAAGTTCTGTTATGGTATGACTGTCACCCTCAATGCTTATAATGTTGTTGCAGCTCGTTGTGCGGCTGAGTATCTAGGGATGCATGAGACTATTGAGAAAGGGAACCTCATCTACAAAATTGATGACCTCAAGGTGATCAGCCACTGCATTGACTCTATAGCTTCCAAAGCTTCCATTGATGTTTCCAGGGTGGATTGGTCCTATACCTATAATCGGAAGAAGCTCCCAGAGGAAAATGGTACTGATCCAAAATGGAATGGTGTTGGAAACCGTCCAGTGGTTCCAAAGGACTGGTGGGTTGAGGACCTTTGTGAGCTTGAAATTGATTTGTACAAGCGTGTTATAATGAGTATCAAAACACAAGCAGTGATTTCTCATGAAGTGATTGGAGAAGCATTGAAAGCTTTTGCTCTCAAAAGGCTGCCAGGTTTCTCCAAGGGCATGATCCCAAATGGAGATACAGCCAAGAGAGAGAGCAAAGAGAGAGCTGTACAGCAAATAGTAGAGGAGTTTCTGATGCAAGAGCAGAATGCTGAGATTGAATCAACAGCTGCCCATGAGCTTCAGGAAGTAAGAAGGCCAGGGATTTTATCGGATGCTTCCAAACTGATGGTGGCAAAGCTGGTGGATGGGTACCTTGCTGAAATTGCCAAGGACCCAAATCTACCTCTGTCAAAGTTTGTTGATCTAGCAGAGCTGGTCTCTGGTTTCTCTCGACCAGCTCATGACGGTCTATACCGAGCCATTGACATGTATCTCAAGGAGCACCCTGGGATCAGCAAGAGTGAAAGGAAGAGAATTTGCAGGCTGATGGACTGCAAGAAGCTATCAGTTGATGCATGCATGCATGCAGTGCAGAATGAGAGACTCCCCTTGCGGGTAGTTGTGCAGGTACTCTTTTTTGAGCAGGTCCGGGCCACCGCTACATCAGGCAGCAGCACCCCTGACCTACCTAAAGGCATCAAGGATCTAAACAGTGCATCCCACGGCAGCTCAAGGTCAGTAACAACCAACACAGAAGAAGACTGGGATGCTGTGGCCACTCTGGAGGAGCTCAAGGCCCTCAAGGGGGAGCTAGCTTCCTTAAGGTTGGGCAATGGAGTGGGAGCAAGTGAGCGTAATGGTGGAGACAGTAAAGGCAGCATCGACAAGGCTGCCATTAACAAAATGAAAGGATTGCTCATGTCAAAGAAGATCTTCACCAAACTCTGGTCAAGCAAATCAGGACAAGGTGAGAATAGCGGATCAGATTCATCAGGGAGCTCTGTATGTATGTATACTAGCCGATTGAAATGCGAGAATAGCAAGAAATATATGATGATTTAA 1581 46.11 MKFMKLGSKPDSFQTDGNSVRYVASELATDIVVNVGEVKFYLHKFPLLSKSECLQKLVAATNDGNSDEVHIPDIPGGPSAFEICAKFCYGMTVTLNAYNVVAARCAAEYLGMHETIEKGNLIYKIDDLKVISHCIDSIASKASIDVSRVDWSYTYNRKKLPEENGTDPKWNGVGNRPVVPKDWWVEDLCELEIDLYKRVIMSIKTQAVISHEVIGEALKAFALKRLPGFSKGMIPNGDTAKRESKERAVQQIVEEFLMQEQNAEIESTAAHELQEVRRPGILSDASKLMVAKLVDGYLAEIAKDPNLPLSKFVDLAELVSGFSRPAHDGLYRAIDMYLKEHPGISKSERKRICRLMDCKKLSVDACMHAVQNERLPLRVVVQVLFFEQVRATATSGSSTPDLPKGIKDLNSASHGSSRSVTTNTEEDWDAVATLEELKALKGELASLRLGNGVGASERNGGDSKGSIDKAAINKMKGLLMSKKIFTKLWSSKSGQGENSGSDSSGSSVCMYTSRLKCENSKKYMMI* 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7103280 7114344 - Vvi3g693 Vvi3g693 784368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g693 526 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Vvi3g693 526 ProSiteProfiles NPH3 domain profile. 249 390 IPR027356 -
Vvi3g693 526 Pfam NPH3 family 182 239 IPR027356 -
Vvi3g693 526 Pfam NPH3 family 245 366 IPR027356 -
Vvi3g693 526 Pfam BTB/POZ domain 26 118 IPR000210 GO:0005515
Vvi3g693 526 PANTHER OS12G0117600 PROTEIN 1 126 IPR043454 -
Vvi3g693 526 PANTHER OS12G0117600 PROTEIN 248 522 IPR043454 -
Vvi3g693 526 PANTHER OS12G0117600 PROTEIN 126 244 IPR043454 -
Vvi3g693 526 MobiDBLite consensus disorder prediction 394 424 - -
Vvi3g693 526 MobiDBLite consensus disorder prediction 410 424 - -
Vvi3g693 526 SUPERFAMILY POZ domain 21 117 IPR011333 -
Vvi3g693 526 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 1 126 IPR029960 GO:0009958
Vvi3g693 526 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 248 522 IPR029960 GO:0009958
Vvi3g693 526 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 126 244 IPR029960 GO:0009958
Vvi3g693 526 Gene3D Potassium Channel Kv1.1; Chain A 5 121 IPR011333 -
Vvi3g693 526 CDD BTB_POZ_NPY3-like 20 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g693 - - - qsu:112003409 716.457
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g693 Vvi7g940 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001152 3 7 3 2 3 2 2 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 8 2 2 79