Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g694 ATGGCTTTGGAAGCGCTGAATTCTCCGACGACGATGTCTCCTACTTTCAAATTTGAGGAGGCGGAGTTGCACTCTCTTGAGCCATGGACGAAGAGGAAGCGATCGAGACGACCCCGTTTTGAGAACCCCTCTACTGAGGAAGAGTACTTGGCTCTGTGTCTCATCATGTTGGCCCGTGGGGGCGCCACCACCCGGGAAGAGCCACAAGGCCAGCCACCGGAAACCCACGAGTGCTCCATCTGCCACCGCACGTTCCCCACCGGGCAGGCCTTGGGCGGCCACAAGCGTTGTCACTACGATGGTGGCAGCAGCGGCGTCACTCAAACTGGGGTTGAGCAAGAGGTGGAGAGTCCACTGCCGGCGAAGAAGCCACGGTTCTTGTTTCCGGTCGGCGATATGAATTCTTCACATGAGAATTTTATCAGTTTGAGGTCAGTTTTCCTAACCTTTCATACAAGCCAAACAAGAAAAATATGGGAAAAATAA 486 53.91 MALEALNSPTTMSPTFKFEEAELHSLEPWTKRKRSRRPRFENPSTEEEYLALCLIMLARGGATTREEPQGQPPETHECSICHRTFPTGQALGGHKRCHYDGGSSGVTQTGVEQEVESPLPAKKPRFLFPVGDMNSSHENFISLRSVFLTFHTSQTRKIWEK* 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7125277 7126323 - Vvi3g694 Vvi3g694 784369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g694 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Vvi3g694 161 Pfam C2H2-type zinc finger 76 100 - -
Vvi3g694 161 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Vvi3g694 161 PANTHER ZINC FINGER PROTEIN ZAT10 73 109 - -
Vvi3g694 161 PANTHER ZINC FINGER PROTEIN ZAT10 1 72 - -
Vvi3g694 161 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 72 IPR044653 GO:0003700
Vvi3g694 161 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 73 109 IPR044653 GO:0003700
Vvi3g694 161 SUPERFAMILY beta-beta-alpha zinc fingers 74 100 IPR036236 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g694 - - - vvi:100258264 198.749
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g694 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000558 4 3 4 7 5 3 6 3 3 3 3 3 6 3 3 6 3 6 5 3 3 3 3 3 2 3 3 3 2 1 108