Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g695 ATGGCCACCTCTCTACTCTCACCTCTCTCTTCTCCTATCTCGCCCTCGACCGTGGACGCTCACGACGTTGGTTCCGCCGGTGGTGCCGTCAAATCCTCTTTCCTTCACTGCACAAAGCTCTTCTCTGCTCCCAAACTCGGAAGAAGCGCAGTTCGGAGAGGGTTCAGGTCTCCATCTGCAAAGGCCTCGTTTGACCACATACCTAAACAGTTCAGAGAGGGAAATCTCCAAGACGGATTGATGGAAAACTATAAAAATGTTCCCCAGTATTTTTATGGCCTTTCACCTTCACAAATGGACATGTTCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTCTATCAGGAGTGAATGACAGGGGTCCTTCAAAATATAGTATGAGTGTAAGCATGTATCGTGGAGGCAGAGGATCTGGAAGACCCAGAACTGCTCCTCCTGATTTGCCATCTTTGCTCTTAGATGCTCGGATTTGCTATCTGGGCATGCCAATCGTACCTGCAGTAGCTGAGCTTCTTGTTGCTCAGTTTATGTGGTTGGATTTTGACAACCCCTCAAAGCCTATATATCTCTACATAAATTCAACTGGAACACAGAATGAGAAGATGGAGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGTACTGCAAGTCGGACGTCTATACAGTGAACTGTGGCACGGCATATGGTCAAGCAGCAATGCTTCTATCAGTTGGAGCCAAGGGTTACCGTGGTCTACAGCCAAATGCCTCCACGAAATTATATCTACCTAAAGTAAACCGATCAAGTGGGGCTACCATAGATATGTGGATTAAGGCCAAAGAACTAGATGCAAACTCGGAGTATTACATTGAGCTATTAGCTAAAGGAACTGGGAAGACAAAGGAAGAAATAAAAAAAGATGTCGAACGCCCAAAATATTTGCAAGCACAAGAAGCCATTGACTATGGCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAGCTGGCCCACAAGCAGCTCCCTCTGGATTTAGGTAA 1167 45.76 MATSLLSPLSSPISPSTVDAHDVGSAGGAVKSSFLHCTKLFSAPKLGRSAVRRGFRSPSAKASFDHIPKQFREGNLQDGLMENYKNVPQYFYGLSPSQMDMFMTEDNPISRQSERVTEESISSARNYMDNGGMWSLSGVNDRGPSKYSMSVSMYRGGRGSGRPRTAPPDLPSLLLDARICYLGMPIVPAVAELLVAQFMWLDFDNPSKPIYLYINSTGTQNEKMETVGSETEAYAIADSMAYCKSDVYTVNCGTAYGQAAMLLSVGAKGYRGLQPNASTKLYLPKVNRSSGATIDMWIKAKELDANSEYYIELLAKGTGKTKEEIKKDVERPKYLQAQEAIDYGLADKIISSMDPAYEKRNYDEMLAQAKSMRRAAGAGPQAAPSGFR* 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7137411 7143834 + Vvi3g695 Vvi3g695 784370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g695 388 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 56 380 - -
Vvi3g695 388 Gene3D - 148 354 - -
Vvi3g695 388 PRINTS Clp protease catalytic subunit P signature 169 184 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g695 388 PRINTS Clp protease catalytic subunit P signature 209 229 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g695 388 PRINTS Clp protease catalytic subunit P signature 249 266 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g695 388 PRINTS Clp protease catalytic subunit P signature 328 347 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g695 388 MobiDBLite consensus disorder prediction 1 22 - -
Vvi3g695 388 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 56 380 IPR023562 -
Vvi3g695 388 Pfam Clp protease 171 352 IPR023562 -
Vvi3g695 388 SUPERFAMILY ClpP/crotonase 164 354 IPR029045 -
Vvi3g695 388 MobiDBLite consensus disorder prediction 1 18 - -
Vvi3g695 388 CDD S14_ClpP_2 169 349 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g695 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - vvi:100253136 749.199
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g695 Blo02g00932 . . Bda08g00678 . . Bma05g00652 . . Cmo11g01416 . . . . . Cpe04g00324 . . . . . . . . . . . . . . . . . . . . Csa07g00689 . Cme01g00116 . . . . . Bpe05g00474 . . . . . Cma11g01702 . Car11g01140 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011358 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31