Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g698 ATGGAGCCTGTTGGAGCCATTTCAGAGGGAGAATGGGGCTCTCTTAGTGGAATGTACACCACTGAGGAGGCTGAGTTCATGGCTCAGTTGTTGGGTAACTGTTCATCATTTCCTAATGAGCTTGATGGAGGGTCAAGCCTGGGCATTCCATCCGCCTTCTGGGCAGCTGGCCATGAATCAGTGAATAAGAGTTTGTATTGTTCTTCAGATGCTGCTAACACTAATCTATATTGTTTTTCACAAGGGAGTAGTAGTTATAGTGGTGGTAGTTCTCTTTTTCCAAATTCAAGTCAAGGGAGCTACTATCTGAGTGATTCTCAACAAGTTTTGGGGGGAAATAACAGCGCCATGTCCATGGATTTTTGTATTGGGGATGACAAAAACAACAGCTTGGCAGTTCAAGTCTTTGCTGATAGCCTAATGGAAGGCGATGAGTACTGCTTGAATGTGGAAGAATGTAGGAGGAACTTTCCTGAGATGCCAGAACTGCCATCAGCCACAGAGGATAAAAACAACAAAATGCCAGAGAATTCCAAGAAAAGGATGCGGGACTCAGGAGATGTGAGTATAAAGAAAAAGTTCTTCATATCTAGTTATGGAGGTGCTTACATTTTCTGCAGTGTCTCTAGCAACAATGAGGAAGACAACAATGGTGGGGTGGTCAATGGGCAGAGCTCGAGCAGCTGCAGCTCAGAGGATGAATCCATTGCTTCCCAGGAGCTGAATGGAAGTTCAAGCCCAAAAGGGTCTGCAGCTCTCAACTCGAAAGACAAAGCAAGAGCCAGTAGAGGATCAGCCACTGATCCCCAAAGCCTCTATGCAAGGAAAAGAAGAGAGAGGATCAATGAGAGGCTGAAAATCTTACAGAACCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTCGAGTACGTGAAGTTTTTGCAACTCCAGATCAAGCTCTTGAGCTCAGATGATCTATGGATGTATGCTCCACTCGCTTACAATGGAATGGACATTGGGCTTGATCTGAAGATCTCCATGCCAAGAAAATGA 1053 44.92 MEPVGAISEGEWGSLSGMYTTEEAEFMAQLLGNCSSFPNELDGGSSLGIPSAFWAAGHESVNKSLYCSSDAANTNLYCFSQGSSSYSGGSSLFPNSSQGSYYLSDSQQVLGGNNSAMSMDFCIGDDKNNSLAVQVFADSLMEGDEYCLNVEECRRNFPEMPELPSATEDKNNKMPENSKKRMRDSGDVSIKKKFFISSYGGAYIFCSVSSNNEEDNNGGVVNGQSSSSCSSEDESIASQELNGSSSPKGSAALNSKDKARASRGSATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPLAYNGMDIGLDLKISMPRK* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7192503 7193911 + Vvi3g698 Vvi3g698 784373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g698 350 CDD bHLH_AtIND_like 266 328 - -
Vvi3g698 350 PANTHER - 3 348 - -
Vvi3g698 350 MobiDBLite consensus disorder prediction 215 252 - -
Vvi3g698 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 329 IPR036638 GO:0046983
Vvi3g698 350 SMART finulus 271 320 IPR011598 GO:0046983
Vvi3g698 350 MobiDBLite consensus disorder prediction 215 275 - -
Vvi3g698 350 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 348 - -
Vvi3g698 350 Pfam Helix-loop-helix DNA-binding domain 275 315 IPR011598 GO:0046983
Vvi3g698 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 314 IPR011598 GO:0046983
Vvi3g698 350 MobiDBLite consensus disorder prediction 159 185 - -
Vvi3g698 350 Gene3D - 266 323 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g698 Vvi18g659 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14678 PF00010 HLH 1.60E-09 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g698 - - vvi:100254852 598.586