Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g704 ATGGCAATCTCATCAATATTCGACGGCGGAGAGCTCAGAAGGCAGTTTCACAGTGCCGGAATAAGCCCTAACTTCATCCCTTTCATTTGGAAGTACGTGGTTCAAAACCCTAACTGCGATTGGGATGACATTACTTCGTTGCCTTCCGCTGCATACCCTCTCCTTCGGTCACACTTCAAACCTTCTACTTCCAGTCTCCACACGGTCATCGATTCGTCCGACAATGTCACCACCAAACTCCTCATCAAGTTGCAGAATGGATCTTTTGTAGAAGCTGTGATTATGAGGTATGACACACGTTTAGGGAAGTATGGTGGAAAACCTCGTCCTGGAGGTCCAAGGTCAACCTTGTGCATATCATCTCAGGTGGGTTGTAAAATGGGCTGCAAATTCTGTGCAACTGGAAGCATGGGATTTAAAAGCAATCTATCCTCAGGAGAAATTGTGGAACAATTAGTGCATGCTTCTCACTTTTCGCAAATACGGAATGTTGTGTTCATGGGAATGGGAGAACCTCTGAATAACTATTCTGCCTTAGTGGAAGCTATCCATATCATGCAAGGATCTCCATTTCAGCTATCACCAAAGAAAATCACTGTATCAACGGTAGGGATTATTCATGCTATCAACAAGCTCCAAAGTGATCTACCAAATTTGAACTTGGCAGTATCACTGCATGCACCAGTTCAAGATATCCGTTGTCAGATAATGCCTGCAGCTCGAGCTTTTCCTTTGGAAAAGCTCATGGATACCCTGCGGACCTACCAAACGAATAGTGGACAGAAAATCTTTATTGAGTACATAATGCTTGATGAGGTGAATGATGAAGAGCAACATGCTCACCAGCTTGGGAAATTGCTGGAGACATTTCAAGTGGTTGTAAATCTTATACCTTTCAATCCCATTGGCAATCTAAGTTATTTTAAAACCAGTAGCGAACAGAAAGTTGCAAGATTTCAGAAAATTCTTAGAGGTACTTATAACATCAGGACAACAGTACGCAAGCAAATGGGTCAAGACATAAGTGGTGCATGTGGTCAGTTGGTGGTTAATCAACCAGATAAGAGGTCTACAGGAAGTGCTGGTCTCTTAACCGACATTGAAGATTTGCATCTTTGA 1119 42.81 MAISSIFDGGELRRQFHSAGISPNFIPFIWKYVVQNPNCDWDDITSLPSAAYPLLRSHFKPSTSSLHTVIDSSDNVTTKLLIKLQNGSFVEAVIMRYDTRLGKYGGKPRPGGPRSTLCISSQVGCKMGCKFCATGSMGFKSNLSSGEIVEQLVHASHFSQIRNVVFMGMGEPLNNYSALVEAIHIMQGSPFQLSPKKITVSTVGIIHAINKLQSDLPNLNLAVSLHAPVQDIRCQIMPAARAFPLEKLMDTLRTYQTNSGQKIFIEYIMLDEVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGNLSYFKTSSEQKVARFQKILRGTYNIRTTVRKQMGQDISGACGQLVVNQPDKRSTGSAGLLTDIEDLHL* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7291826 7302798 + Vvi3g704 Vvi3g704 784379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g704 372 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 2 369 - -
Vvi3g704 372 PANTHER 23S RRNA METHYLTRANSFERASE 2 369 IPR040072 -
Vvi3g704 372 ProSiteProfiles Radical SAM core domain profile. 111 340 IPR007197 GO:0003824|GO:0051536
Vvi3g704 372 Pfam 4Fe-4S single cluster domain 124 211 - -
Vvi3g704 372 Gene3D Aldolase class I 65 356 IPR013785 -
Vvi3g704 372 SUPERFAMILY Radical SAM enzymes 113 326 - -
Vvi3g704 372 CDD Radical_SAM 124 325 - -
Vvi3g704 372 SFLD methyltransferase (Class A) 27 357 - -
Vvi3g704 372 TIGRFAM rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 15 351 IPR027492 GO:0030488|GO:0070475
Vvi3g704 372 PIRSF Cfr 7 364 IPR004383 GO:0006364|GO:0008173
Vvi3g704 372 Pfam Radical SAM superfamily 120 278 IPR007197 GO:0003824|GO:0051536
Vvi3g704 372 SFLD adenosine C2 methyltransferase (RlmN-like) 27 357 IPR004383 GO:0006364|GO:0008173
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g704 - - - vvi:100259962 735.717
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g704 . . . . . . . . Cmo19g00565 . . . . . . . Cpe15g00438 . . . . . . . Cla02g00682 Cam02g0716 Cec02g0729 Cco02g0751 Clacu02g0725 Cmu02g0723 Cre02g1035 Cone12ag1045 Cone8ag1078 . . Lsi03g00576 Csa07g00683 . Cme01g00121 . . . . . . . . . . . . Cma19g00551 . Car19g00409 . . . . . . . . . . . . . . . . . . Chy01g00131 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011647 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30