Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g708 ATGGAGAAGGCGGAGGCCGAGCCATCAGCCTCGGCAGATTCAGCCCGGCCATGGCAGTCCTACACCACCGTATACACTAACGCCAAAGCAGGGATGGATGGGGTTGACAAGGAGAAAGTGCAGAGGACAGTTTATGAGATGAGCAAAGGGTCAAAGTATTTTGAGAATGAGGAGCGCAAGGAGGCTTTCATCAGGCAGAAGATCGACAACATGCGTGCTCGGTGCGCAAAACTCTCTGCCTCTGACATATCTCATTATCAAATGGTTGCTGATAAAAGAATTTTGGAGCTAGAAGCTACGCGTGATCTATCAAGGATTTGGCTACATGTAGATATGGATGCTTTCTATGCTGCTGTTGAAACATTAGATAATCCTTCATTAAGGGGCAGACCAATGGCAGTTGGTGGCATGTCTATGATCTCCACCGCTAATTATGAGGCCCGAAAATTTGGGGTTCGTGCTGCAATGCCTGGTTTCATTGCACGTAAATTATGCCCAGAGTTGATTTTTGTTCCCACAGACTTCAAGAAGTATACTTATTATAGTGATTTAACTAGAAAAGTTTTCCAGAAGTACGATCCCAACTTCATGGCAGCTAGTTTGGATGAAGCCTACCTTGATATTACTGAGGTCTGCAATGAGAGGGACCTTACTAGTGGAGAAATTGCTGAAGAACTCAGAACAAGTGTTCATGAAGTGACTGGTCTTACATGCAGCGCCGGAGTGGCACCAAACCGCTTACTTGCTAAGGTTTGCTCAGACATAAACAAGCCAAATGGACAGTTTGTTTTACCGAGTAATCGGATGGCGGTCATGACTTTTATTTCCTCACTTCCCATACGAAAGATTGGGGGCATTGGTAAAGTGACTGAACATATTTTAAGTGGTGTTTTTGGAATTAATACATGTGAGGAGATGCTTCAAAAGGGTGGTTTCCTCTGTGCACTATTTTCTCGTTCTTCTGCAGATTTTTTCCTCTCTGTGGGACTGGGACTTGGGAAAACGGATACACCTCAAGTTAGGTTCCGGAAAAGTATAAGTAATGAGAGGACATTTTCAGCCACTGATGACACTGCATTGCTTTATCAGAAATTAGCTGAGCTTTCGGAGATGCTATCTATTGATATGCAAAAAGAAGGACTTTCTGGAAGAACATTGACTCTGAAACTGAAGACTGCATCTTTTGAGGTTCGGAGTAGAGCTGTGACTATGCAAAAATATATTTGCTCAAGAGAGGATATTCTGAATCATGCTTTGAAGCTACTAAATGCTGAGCTTCCTCTATCTTTAAGATTGATTGGCCTGCGCATATCTCATTTCAATGAGGACAAGGATGGTCATCTATCTGATCCAACACAAAAGACTCTTGCTAACTTTATTATATCAGGAGATGCTTCTGGAAAGAATGTGTGTGAACACAGTTTGTTGGGCTCAGATACAAGTGATAGCCACTTCATGGTTGACCCAGAAAATGATCTTTCTATTGACAACCATGAGACATGTCATTATGTTTCTGAAGACCTGTTGGACAGCAACCTATTATCAGATCTTGATCACTGTAATTTTAATTTGAGCAATAATTCTGGTAAAATAGACAACAATAACGAACTTCCCCTGAATGGATCTGTGGCTAAGGTGAATGCCCCTAATGTTGTAGGGTGTGCTCCAAAATCCCATCAAATCAAAGTATCACATTTAGTAGAGGCAGATTCTTTTTCTTTCTCTGAACAGTGTGAGTCAAACAGGCCAGACAGAGCGAGAAGGACCAACAATGATTTGGATGATGGAGTTCCTTCTTCAAATCAGAAAGAGCAATTTTTGTGGGTGAATGACTACAAATGTTCACTATGTGGGATTGAATTACCTCCTAATTTTGTTGAGGAAAGGCAAGAACATTTTGATTTTCATCTTGCTGAGAAGTTGCAGAAAGAGGAATCTGACAACTCAAGAAACCTTATGTTGAATCAAAGGTTTTCCCAGAGAGACCACACTGCAAGCCAAAGAAGACATAAGAGGCACAAGTCTTCGAAGAAAGAAGGCAGCAAGTCATCTCAAAAAGAAAGCAAACATCTTCCTATTGATATGTTCTTTGTGAAAAGTAACCAGAACTTCTAG 2115 41.51 MEKAEAEPSASADSARPWQSYTTVYTNAKAGMDGVDKEKVQRTVYEMSKGSKYFENEERKEAFIRQKIDNMRARCAKLSASDISHYQMVADKRILELEATRDLSRIWLHVDMDAFYAAVETLDNPSLRGRPMAVGGMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFQKYDPNFMAASLDEAYLDITEVCNERDLTSGEIAEELRTSVHEVTGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPSNRMAVMTFISSLPIRKIGGIGKVTEHILSGVFGINTCEEMLQKGGFLCALFSRSSADFFLSVGLGLGKTDTPQVRFRKSISNERTFSATDDTALLYQKLAELSEMLSIDMQKEGLSGRTLTLKLKTASFEVRSRAVTMQKYICSREDILNHALKLLNAELPLSLRLIGLRISHFNEDKDGHLSDPTQKTLANFIISGDASGKNVCEHSLLGSDTSDSHFMVDPENDLSIDNHETCHYVSEDLLDSNLLSDLDHCNFNLSNNSGKIDNNNELPLNGSVAKVNAPNVVGCAPKSHQIKVSHLVEADSFSFSEQCESNRPDRARRTNNDLDDGVPSSNQKEQFLWVNDYKCSLCGIELPPNFVEERQEHFDFHLAEKLQKEESDNSRNLMLNQRFSQRDHTASQRRHKRHKSSKKEGSKSSQKESKHLPIDMFFVKSNQNF* 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7326028 7339940 - Vvi3g708 Vvi3g708 784383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g708 704 PIRSF DNA_pol_eta 99 219 - -
Vvi3g708 704 PIRSF DNA_pol_eta 490 701 - -
Vvi3g708 704 PIRSF DNA_pol_eta 216 426 - -
Vvi3g708 704 CDD PolY_Pol_IV_kappa 108 440 IPR022880 GO:0003887
Vvi3g708 704 ProSiteProfiles UmuC domain profile. 107 287 IPR001126 GO:0006281
Vvi3g708 704 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 12 673 - -
Vvi3g708 704 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 341 438 IPR036775 GO:0003684|GO:0006281
Vvi3g708 704 Pfam impB/mucB/samB family C-terminal domain 343 444 IPR017961 GO:0003684|GO:0006281
Vvi3g708 704 MobiDBLite consensus disorder prediction 644 692 - -
Vvi3g708 704 Gene3D - 263 336 - -
Vvi3g708 704 ProSiteProfiles Zinc finger UBZ3-type profile. 607 644 IPR041298 -
Vvi3g708 704 Pfam impB/mucB/samB family 110 254 IPR001126 GO:0006281
Vvi3g708 704 Gene3D - 112 262 IPR043128 -
Vvi3g708 704 Gene3D - 124 172 - -
Vvi3g708 704 Pfam Ubiquitin-Binding Zinc Finger 611 644 IPR041298 -
Vvi3g708 704 Gene3D - 341 447 IPR036775 GO:0003684|GO:0006281
Vvi3g708 704 PANTHER DNA POLYMERASE KAPPA 12 673 - -
Vvi3g708 704 Coils Coil 54 74 - -
Vvi3g708 704 MobiDBLite consensus disorder prediction 577 600 - -
Vvi3g708 704 Gene3D - 25 111 - -
Vvi3g708 704 SUPERFAMILY DNA/RNA polymerases 81 335 IPR043502 -
Vvi3g708 704 Hamap DNA polymerase IV [dinB]. 104 450 IPR022880 GO:0003887
Vvi3g708 704 MobiDBLite consensus disorder prediction 664 679 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g708 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7] - vvi:100253205 1361.67
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30