Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g715 ATGGACATCAAGCCATCAAGATTGATTGGAGACAAAAATGAAAGGGAAAGAAGACATGTGAACAACATGGTTTGTTCCTATTGGCTCCGTGGGAGGTGCAACAGAAACCCTTGTAGGTTCCTGCACCAAGAATTGCCCCAAAACACCCACTATCAAATTTCAAATCAGTTCGGCAAAAACTGCTGGCAGAGGAACCCCGACTCTGATTCGAAGAGTGCATCAAGTTTAACGAGTCTGGATAGGTCATCAGGTTCAACAACTCCGAAGTGTTCATCAGCTTCAAATCAATCCCATAGAAACAACAGGGAGAGGTCTCTCTATTCTGACCAGAAGGGTGAATGGGACTCAACTAATCTAAGGTGTTCATCAAGTTCAACAAGAGCAGGAAGTAGCTCTGGAAATGGAATTACACAGAAAGTAATTGGAGAAAGGGTCTGCAAGTACTGGCTACATGGAAATTGTGTGGAGGCAGATAAGTGCCAGTATCTCCATTCATGGTTTAAGGGCCATGGGGTTTTCAAGTTGGCAGAGCTTAATGGGCACATCATGGCCATCTCTGGAATTGTGCTTCCTTCTGGCTCAAAGAAGCTCTATACTGCCAGTAGGGATGGGTATATACGGGTTTGGGACTGCCATACTGGTCAATGTGATGGTGTGGTCAATCTTGGAGGGGAAATTGGGTCCTTAATCAGTGCAGGCCCTTGGGTATTTGCTGGAATAAAAGATGTTGTTAAGGCATGGAATATTGAGTCTTGTGCTAATCTCTCTCTTGACGGACCAGTTGGGCAAATTTATGCTATGGTGGTGAATAATGATATTCTATTTGCGGGGGCACAGAATGGCACTATACATGCATGGAAAGCCAATAAGGAAACCAATGCTTTTGAGCCAGCTACAACATTGGAAGGCCACAATGGTGCTGTGGTTTCCCTCACAGTAGGTGGTGGGAGACTTTATTCTGGTTCCATGGACAATACAATAAGAGTGTGGGATCTTGATACATTACAATGTATTCATACACTGAAGGAGCATGCATCAGTTGTGATGTCTCTTGTTTGTTGGGGTCCCTATTTAATATCATGTTCATTGGACCAAACAATTAAGGTTTGGTTTGCTATTGAAGCTGGCAACCTGGAAGTGACTTACACACACAATGAAGAACATGGTGTGCTATCTCTTTTTGGTATGAACAATTTGGAAGGGAAACCAATATTGTTGTGCTCTTGCAATGACAATTCTGTGCGGCTTTATGAATTACCATCATTCACTGAGAAGGGCAGGATATTTGCAAAAGAAGAAGTCCGAGAGATTCAGATAGGGCCAGGGGGACTTGTTTTCACTGGGGATGGAACTGGACAAGTTGATGTTTGGAAATGGCAGGCAGAGCCAACTTCATTGACATCTGAATGA 1410 43.62 MDIKPSRLIGDKNERERRHVNNMVCSYWLRGRCNRNPCRFLHQELPQNTHYQISNQFGKNCWQRNPDSDSKSASSLTSLDRSSGSTTPKCSSASNQSHRNNRERSLYSDQKGEWDSTNLRCSSSSTRAGSSSGNGITQKVIGERVCKYWLHGNCVEADKCQYLHSWFKGHGVFKLAELNGHIMAISGIVLPSGSKKLYTASRDGYIRVWDCHTGQCDGVVNLGGEIGSLISAGPWVFAGIKDVVKAWNIESCANLSLDGPVGQIYAMVVNNDILFAGAQNGTIHAWKANKETNAFEPATTLEGHNGAVVSLTVGGGRLYSGSMDNTIRVWDLDTLQCIHTLKEHASVVMSLVCWGPYLISCSLDQTIKVWFAIEAGNLEVTYTHNEEHGVLSLFGMNNLEGKPILLCSCNDNSVRLYELPSFTEKGRIFAKEEVREIQIGPGGLVFTGDGTGQVDVWKWQAEPTSLTSE* 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7428321 7430945 - Vvi3g715 Vvi3g715 784390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g715 469 Gene3D - 228 468 IPR015943 GO:0005515
Vvi3g715 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 340 IPR001680 GO:0005515
Vvi3g715 469 SUPERFAMILY WD40 repeat-like 174 461 IPR036322 GO:0005515
Vvi3g715 469 PANTHER - 1 468 - -
Vvi3g715 469 SMART WD40_4 250 287 IPR001680 GO:0005515
Vvi3g715 469 SMART WD40_4 375 418 IPR001680 GO:0005515
Vvi3g715 469 SMART WD40_4 421 458 IPR001680 GO:0005515
Vvi3g715 469 SMART WD40_4 171 210 IPR001680 GO:0005515
Vvi3g715 469 SMART WD40_4 334 371 IPR001680 GO:0005515
Vvi3g715 469 SMART WD40_4 294 331 IPR001680 GO:0005515
Vvi3g715 469 ProSiteProfiles Zinc finger C3H1-type profile. 24 45 IPR000571 GO:0046872
Vvi3g715 469 MobiDBLite consensus disorder prediction 64 135 - -
Vvi3g715 469 PANTHER WD REPEAT-CONTAINING 1 468 - -
Vvi3g715 469 Gene3D - 169 225 IPR015943 GO:0005515
Vvi3g715 469 MobiDBLite consensus disorder prediction 64 101 - -
Vvi3g715 469 SMART c3hfinal6 21 44 IPR000571 GO:0046872
Vvi3g715 469 SMART c3hfinal6 142 166 IPR000571 GO:0046872
Vvi3g715 469 SUPERFAMILY CCCH zinc finger 143 165 IPR036855 GO:0046872
Vvi3g715 469 ProSitePatterns Trp-Asp (WD) repeats signature. 318 332 IPR019775 -
Vvi3g715 469 MobiDBLite consensus disorder prediction 111 135 - -
Vvi3g715 469 Gene3D - 23 168 - -
Vvi3g715 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 301 334 - -
Vvi3g715 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 210 - -
Vvi3g715 469 PRINTS G protein beta WD-40 repeat signature 197 211 IPR020472 -
Vvi3g715 469 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Vvi3g715 469 PRINTS G protein beta WD-40 repeat signature 358 372 IPR020472 -
Vvi3g715 469 ProSiteProfiles Zinc finger C3H1-type profile. 145 167 IPR000571 GO:0046872
Vvi3g715 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 210 IPR001680 GO:0005515
Vvi3g715 469 Pfam WD domain, G-beta repeat 336 370 IPR001680 GO:0005515
Vvi3g715 469 Pfam WD domain, G-beta repeat 297 331 IPR001680 GO:0005515
Vvi3g715 469 Pfam WD domain, G-beta repeat 175 210 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g715 - - - vvi:100244661 960.674
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g715 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002775 4 2 1 3 1 1 1 1 1 1 0 1 1 1 1 1 1 5 1 1 1 3 1 1 1 1 1 2 1 6 47