Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g722 ATGGGTGCTCCTAAGCAGAAATGGACACCAGAAGAAGAAGCAGCACTTAAAGCTGGAGTTGTTAAACATGGGGCGGGCAAATGGCGCACAATACTTAAGGACCCAGAATTTAGCGGTGTCTTGTTTCTGCGTTCAAATGTGGATCTCAAGGACAAGTGGAGAAACATGAGTGTGATGGCAAATGGATGGGGCTCAAGGGAGAAGGCTAGATTGGCTCTCAGAAAGGTGCCATCAGCCCCTAAAGCAGAAGAGAACCCTCTGTCTCTCGGTACAGCAGTTCAAAGTGATGATGAAACTGTTGATACTAAGGCCCTTGCACTACCTAGCAATCCTGTGCAGATTACTGGTTCAAAACGGTCATTCTCAAGGTTGGATAATTTAATATTGGAAGCTATAACCAACTTGAAGGAGCCTGGTGGTTCTAATAAAACTACTATTGCTACATACATAGAGGATCAATATCGGGCGCCTCCAAACTTCAAAAGACTATTGTCCGCAAAATTGAAGTTTTTTACAACAAATGGAAAATTGATTAAGGTGAAACGTAAGTACAGGATTGCACATACTCCAGCATTTTCTGAGAGAAGAAGAAACTCTTCTATGCCATTCCTGGAGGGGAGACAGGGGTTTTCTCCCAAAGTTGACAAGGATGATATCCATATTCTCACTAAAGCCCAGGTTGATTTTGAGTTGGCCCAGATGAGGGGTATGACTGCGGAAGAAGCAGCTATAGTTGCTGCTCGAGCAGTTGCAGAGGCAGAAGCTGCCCTTGCAGAAGCTGAAGAGGCTGCAAGGGAAGCAGATGCAGCAGAAGCTGATGCAGAAGCAGCACAAGCTTTTGCAGCAGCAGCAATGAAAACACTGAAAGGCAGGAGCAACCCAAAGACGAATGGCCATCCTTGA 903 45.51 MGAPKQKWTPEEEAALKAGVVKHGAGKWRTILKDPEFSGVLFLRSNVDLKDKWRNMSVMANGWGSREKARLALRKVPSAPKAEENPLSLGTAVQSDDETVDTKALALPSNPVQITGSKRSFSRLDNLILEAITNLKEPGGSNKTTIATYIEDQYRAPPNFKRLLSAKLKFFTTNGKLIKVKRKYRIAHTPAFSERRRNSSMPFLEGRQGFSPKVDKDDIHILTKAQVDFELAQMRGMTAEEAAIVAARAVAEAEAALAEAEEAAREADAAEADAEAAQAFAAAAMKTLKGRSNPKTNGHP* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7563889 7582110 - Vvi3g722 Vvi3g722 784397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g722 300 Gene3D - 2 59 - -
Vvi3g722 300 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi3g722 300 SUPERFAMILY Winged helix DNA-binding domain 118 197 IPR036390 -
Vvi3g722 300 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi3g722 300 SUPERFAMILY Homeodomain-like 2 68 IPR009057 -
Vvi3g722 300 Gene3D - 117 197 IPR036388 -
Vvi3g722 300 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vvi3g722 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Vvi3g722 300 Coils Coil 243 280 - -
Vvi3g722 300 PANTHER SINGLE MYB HISTONE 4 1 296 IPR044597 GO:0003691
Vvi3g722 300 SMART sant 4 59 IPR001005 -
Vvi3g722 300 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi3g722 300 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 296 - -
Vvi3g722 300 CDD SANT_TRF 6 56 - -
Vvi3g722 300 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g722 K09422 MYBP; transcription factor MYB, plant - vvi:100261713 511.146
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g722 . Blo03g00069 Bda06g01187 . Bpe07g00280 . . Bma12g00288 . . . . . . . . . . . . . . . . Cla10g00975 Cam10g0998 Cec10g1028 Cco10g0991 Clacu10g1019 Cmu10g1802 Cre10g1176 . . Cone8ag0167 Cone12ag0173 . . . . . . . . . . . . . Cmo04g00473 Cmo16g00332 . . . . Cpe14g00260 Cpe01g00396 Bhi11g01125 . . . . . . . . . . . . . Lsi03g01014 . . Cme07g02198
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi3g722 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 62.2 7.8e-80 294.3
Vvi11g152 . 1 280 Single Myb Histone (SMH) Gene Family AT1G17520 50.7 1.3e-68 256.9
Vvi11g152 . 1 282 Single Myb Histone (SMH) Gene Family AT1G72740 50.9 2.5e-64 242.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14680 PF00538 Linker_histone 2.60E-09 CL0123 Vvi TF