Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g722 ATGGGTGCTCCTAAGCAGAAATGGACACCAGAAGAAGAAGCAGCACTTAAAGCTGGAGTTGTTAAACATGGGGCGGGCAAATGGCGCACAATACTTAAGGACCCAGAATTTAGCGGTGTCTTGTTTCTGCGTTCAAATGTGGATCTCAAGGACAAGTGGAGAAACATGAGTGTGATGGCAAATGGATGGGGCTCAAGGGAGAAGGCTAGATTGGCTCTCAGAAAGGTGCCATCAGCCCCTAAAGCAGAAGAGAACCCTCTGTCTCTCGGTACAGCAGTTCAAAGTGATGATGAAACTGTTGATACTAAGGCCCTTGCACTACCTAGCAATCCTGTGCAGATTACTGGTTCAAAACGGTCATTCTCAAGGTTGGATAATTTAATATTGGAAGCTATAACCAACTTGAAGGAGCCTGGTGGTTCTAATAAAACTACTATTGCTACATACATAGAGGATCAATATCGGGCGCCTCCAAACTTCAAAAGACTATTGTCCGCAAAATTGAAGTTTTTTACAACAAATGGAAAATTGATTAAGGTGAAACGTAAGTACAGGATTGCACATACTCCAGCATTTTCTGAGAGAAGAAGAAACTCTTCTATGCCATTCCTGGAGGGGAGACAGGGGTTTTCTCCCAAAGTTGACAAGGATGATATCCATATTCTCACTAAAGCCCAGGTTGATTTTGAGTTGGCCCAGATGAGGGGTATGACTGCGGAAGAAGCAGCTATAGTTGCTGCTCGAGCAGTTGCAGAGGCAGAAGCTGCCCTTGCAGAAGCTGAAGAGGCTGCAAGGGAAGCAGATGCAGCAGAAGCTGATGCAGAAGCAGCACAAGCTTTTGCAGCAGCAGCAATGAAAACACTGAAAGGCAGGAGCAACCCAAAGACGAATGGCCATCCTTGA 903 45.51 MGAPKQKWTPEEEAALKAGVVKHGAGKWRTILKDPEFSGVLFLRSNVDLKDKWRNMSVMANGWGSREKARLALRKVPSAPKAEENPLSLGTAVQSDDETVDTKALALPSNPVQITGSKRSFSRLDNLILEAITNLKEPGGSNKTTIATYIEDQYRAPPNFKRLLSAKLKFFTTNGKLIKVKRKYRIAHTPAFSERRRNSSMPFLEGRQGFSPKVDKDDIHILTKAQVDFELAQMRGMTAEEAAIVAARAVAEAEAALAEAEEAAREADAAEADAEAAQAFAAAAMKTLKGRSNPKTNGHP* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7563889 7582110 - Vvi3g722 Vvi3g722 784397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g722 300 Gene3D - 2 59 - -
Vvi3g722 300 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi3g722 300 SUPERFAMILY Winged helix DNA-binding domain 118 197 IPR036390 -
Vvi3g722 300 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi3g722 300 SUPERFAMILY Homeodomain-like 2 68 IPR009057 -
Vvi3g722 300 Gene3D - 117 197 IPR036388 -
Vvi3g722 300 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vvi3g722 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Vvi3g722 300 Coils Coil 243 280 - -
Vvi3g722 300 PANTHER SINGLE MYB HISTONE 4 1 296 IPR044597 GO:0003691
Vvi3g722 300 SMART sant 4 59 IPR001005 -
Vvi3g722 300 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi3g722 300 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 296 - -
Vvi3g722 300 CDD SANT_TRF 6 56 - -
Vvi3g722 300 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14680 PF00538 Linker_histone 2.60E-09 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g722 K09422 - vvi:100261713 511.146