Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g728 ATGCCACAATCTGTCCTGCAAATAGTAATTAAGGAAATTATAACGATTTCCAGAACATTAAGATACATCCAACCGTCCGACTACTTGTTCCGGGTAGAGTGTGTCTCTTCCCTGATGAACACAAACATTGAAAAGTATGAATCAGGGAAATTTGAAGCAGGTGGCTACAAATGGAGATTGTGTCTCTACCCAAACGGGAATATAAAAAGTAATGGGAAAGGTTACATCTCCCTTTACTTAGCAATAGCAGATACTAAAATGCTTCCTCTTGGTTGGGAGGTTAATGTTAACTTCAAATTGTTTGTGTTTAATCATAAACATGACCAGTACTTAACTGTCCAAGATGCTGGTGGGAAGCTAACCCGCTTCAATGTGATGAAGACTCAATGTGGTTTTCCTCAGTTTCTGTCGCTAGATGTTCTCAATGATCCTTGTAATGGATACCTGATGGAGGACTCTTGCATATTTGGAGCAGAGGTTTTTGTTATAAAATATAGTGGCAAAGGGGAGTGTCTTTCCATGATAAAGGAACCTGTTGATGGTACTTTCACTTGGGTGATTGAGAATTTCTCTACACTGAAGGAGAAAGTCATGTACTCTGATGTATTCACAGTTGAAGATTTCAAATGGAAGCTAATTCTCTACCCCAAAGGAAGTTCTAAGACAAAGAACAAAAGCCTATCCCTCTTTCTAGAGCTGGCTGACTGTGAAACACTTGATAATCAGAGTAAGTTGTATGCTGAATTCGAGCTGTTGATAAGTGATCAAGGCAACCTTGGATATGTCAAACACCACGGTACATATTATTCTTTTTCCTTCTTATATTCTCCTGCTTTAACTCATGACAAGGTTACTGTTGTCTGGTTTAAGTTGAAATCATATTGTCCTTCTACTTTGCCAGTTCCAAAATATTCTGTTGAAGTGAAGCACCAAACCAAAAACTTCAATCACTTTGCTATTGGTTAG 966 38.3 MPQSVLQIVIKEIITISRTLRYIQPSDYLFRVECVSSLMNTNIEKYESGKFEAGGYKWRLCLYPNGNIKSNGKGYISLYLAIADTKMLPLGWEVNVNFKLFVFNHKHDQYLTVQDAGGKLTRFNVMKTQCGFPQFLSLDVLNDPCNGYLMEDSCIFGAEVFVIKYSGKGECLSMIKEPVDGTFTWVIENFSTLKEKVMYSDVFTVEDFKWKLILYPKGSSKTKNKSLSLFLELADCETLDNQSKLYAEFELLISDQGNLGYVKHHGTYYSFSFLYSPALTHDKVTVVWFKLKSYCPSTLPVPKYSVEVKHQTKNFNHFAIG* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7716201 7726782 - Vvi3g728 Vvi3g728 784403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g728 321 ProSiteProfiles MATH/TRAF domain profile. 180 321 IPR002083 GO:0005515
Vvi3g728 321 CDD MATH 28 160 IPR002083 GO:0005515
Vvi3g728 321 ProSiteProfiles MATH/TRAF domain profile. 25 160 IPR002083 GO:0005515
Vvi3g728 321 SMART math_3 30 141 IPR002083 GO:0005515
Vvi3g728 321 SMART math_3 182 284 IPR002083 GO:0005515
Vvi3g728 321 Pfam MATH domain 187 255 IPR002083 GO:0005515
Vvi3g728 321 Pfam MATH domain 32 162 IPR002083 GO:0005515
Vvi3g728 321 PANTHER TRAF-LIKE FAMILY PROTEIN 12 270 - -
Vvi3g728 321 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 173 284 IPR008974 GO:0005515
Vvi3g728 321 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 15 168 IPR008974 GO:0005515
Vvi3g728 321 PANTHER - 12 270 - -
Vvi3g728 321 SUPERFAMILY TRAF domain-like 178 285 - -
Vvi3g728 321 CDD MATH 181 272 IPR002083 GO:0005515
Vvi3g728 321 SUPERFAMILY TRAF domain-like 26 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g728 - - - vvi:100242863 518.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g728 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000322 1 4 0 1 0 3 1 5 3 1 2 2 2 4 7 1 2 2 1 3 4 3 7 22 21 3 8 14 6 4 137