Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g730 ATGGCGGATGAAAAACCACCAGTTGTGGCAGAGAAGACCTTGCATCCTACCTCTCTCTGTAACACCACTTCAATATCAAGAACATTAAGATCTATCCAGCCAGCCCATTACTTATTCAAGGTAGAATCTCTGTCAGTGCTTCTGAACACAGATATTGAAAAATATGAATCAGGTTCATTTGAAGTGGGTGGCTACAAATGGAGCTTGTGTATCTACCCAAATGGGAATAAAAAAAGTGACGGGGAAGGTCACATCTCCCTCTATTTAGAAATATCAGAGGCTCAAAATCTTCCTCTTGGGTGGGAGGTTACTGTCAACTTCAAATTGTTTGTGTTTAATCATATACATGAAAAGTACTTAACTGTCCAAGATGCTGATGGGAAGGTAAGGCACTTCAATGCGATGAAGACTCGATGTGGGTTTGCTCAGTTTCTTTCACTGGATGTTCTCAAGGATCCTCGTAATGGATACTTGATGGATGATTCTTGCATTTTCGGAGCAGAGGTTTTTGTTATTAAATATAGTGGCAAAGGGGAGAGTCTTTCCATGATAAAGGATCCTGTTGATGGTACTTTCACTTGGACGATTGAGAATTTCTCCGCACTGAATCAGGAAGTCCTAGACTCTGAAATATTCACTGTTAAAGAATTGAAATGGAGGTTGGTTCTCTACCCCAAAGGAAATAATAAGGCAAAGAACAAAAGCCTGTCCCTCTTTCTAGAGCTGACTAATCGTGAAACACTTCATCAAAGGAAACTGTATACTGCATTCGAGTTGTTGATAAAGGATCAATGCAATGATGAAATTGTTATGCCATCGCATGTTAAATCAAATGCTAAGGTTTGGTTCCGTGACACAATCGAAAATTGGGGTTTTCCTAATATGGTATCTCTGAGTGATCTCAATGACAAATCCAAATACTTCTTATTAAATGACAGTTTGATATCAACCCCTTCTGCAGTTTTCTTCCCATCTAAGTCTACTTTACCAACTCATTTCATACAATCTTTTGGGGATCAGAGGTTTCCAGCCATGGCGGATGAAAAACCACCAGAGAAGACCTTGCATCCTACCTCTATCTGTAACAGTACCACTTCAATATCAAGAACATTAAGATCTATCAAACCAGCCCATTACTTATTCAGGGTAGAATCTGTGTCAGTGCTTCTTAACACAGATATTGAAAAATATGAATCAGGTTCATTTAAAGTGGGTGGCTACAGATGGAGATTGTGTCTCTACCCAAATGGGAATAAAAAAAGTGGCGGGGAAGATCACATCTCCCTCTATTTAGAAATATCAGATGCTCAAAAGCTTCCTGTTGGGTGGGAGGTTACTGTCAACTTCAAATTGTTTGTGTTTAATCATATACATGAGAAGTACTTAACTGTCCAAGATGCTGATGGGAAGGTAAGGGACTTCAATGTGATGAAGTCTCGATGTGGGTTTGCTCAGTTTCTTTCACTGGATGTTCTCAAGGATCCTTGTAATGGATACTTGATGGATGATTCTTGCATTTTCGGAGCAGAGGTTTTTGTTATTAAATACAGTGGCAAAGGGGAGTGTCTTTCAATGATAAAGGATCCCGATGATGGTACTTTCACTTGGGTGATTGAGAATTTCTCCACACTGAATGAGGAAGTCCTATACTCTGAAACATTCACTATTAAAGAAATCAAATGGAAGTTGAGTCTCTACCCAAAAGGTAATGGTAAAGTAAAGAACAAAAGCCTGTGCCTCTTTCTAGAGCTGGCTGATTGTGAAACACTTCATCATCAAAGGAAATTGTATATGGAATTCGAGTTGTTGATAAAGGATCAATGCAATGATGAAAATGTTGAACCATCGCATGTTAAATCAAATGCTAAGGTTTGGTTCTGTGACTCGAACAAAGAATGGGGTTTTGCTGATATGGTCTCTCTGAGTGATCTCAATGACAAATCCAAAGATTTCCTATTGAATGATAGTTTGATAGTCGAAGCCAAGATTTTGCTCATGATGCATTCGAAGAATATCTAA 2019 38.83 MADEKPPVVAEKTLHPTSLCNTTSISRTLRSIQPAHYLFKVESLSVLLNTDIEKYESGSFEVGGYKWSLCIYPNGNKKSDGEGHISLYLEISEAQNLPLGWEVTVNFKLFVFNHIHEKYLTVQDADGKVRHFNAMKTRCGFAQFLSLDVLKDPRNGYLMDDSCIFGAEVFVIKYSGKGESLSMIKDPVDGTFTWTIENFSALNQEVLDSEIFTVKELKWRLVLYPKGNNKAKNKSLSLFLELTNRETLHQRKLYTAFELLIKDQCNDEIVMPSHVKSNAKVWFRDTIENWGFPNMVSLSDLNDKSKYFLLNDSLISTPSAVFFPSKSTLPTHFIQSFGDQRFPAMADEKPPEKTLHPTSICNSTTSISRTLRSIKPAHYLFRVESVSVLLNTDIEKYESGSFKVGGYRWRLCLYPNGNKKSGGEDHISLYLEISDAQKLPVGWEVTVNFKLFVFNHIHEKYLTVQDADGKVRDFNVMKSRCGFAQFLSLDVLKDPCNGYLMDDSCIFGAEVFVIKYSGKGECLSMIKDPDDGTFTWVIENFSTLNEEVLYSETFTIKEIKWKLSLYPKGNGKVKNKSLCLFLELADCETLHHQRKLYMEFELLIKDQCNDENVEPSHVKSNAKVWFCDSNKEWGFADMVSLSDLNDKSKDFLLNDSLIVEAKILLMMHSKNI* 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7741935 7749302 - Vvi3g730 Vvi3g730 784405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g730 672 CDD MATH 378 511 IPR002083 GO:0005515
Vvi3g730 672 SUPERFAMILY TRAF domain-like 376 519 - -
Vvi3g730 672 ProSiteProfiles MATH/TRAF domain profile. 376 511 IPR002083 GO:0005515
Vvi3g730 672 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 21 177 IPR008974 GO:0005515
Vvi3g730 672 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 524 668 IPR008974 GO:0005515
Vvi3g730 672 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 362 519 IPR008974 GO:0005515
Vvi3g730 672 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 182 317 IPR008974 GO:0005515
Vvi3g730 672 SMART math_3 533 644 IPR002083 GO:0005515
Vvi3g730 672 SMART math_3 191 301 IPR002083 GO:0005515
Vvi3g730 672 SMART math_3 39 150 IPR002083 GO:0005515
Vvi3g730 672 SMART math_3 381 492 IPR002083 GO:0005515
Vvi3g730 672 CDD MATH 532 663 IPR002083 GO:0005515
Vvi3g730 672 ProSiteProfiles MATH/TRAF domain profile. 531 663 IPR002083 GO:0005515
Vvi3g730 672 ProSiteProfiles MATH/TRAF domain profile. 34 169 IPR002083 GO:0005515
Vvi3g730 672 SUPERFAMILY TRAF domain-like 531 665 - -
Vvi3g730 672 SUPERFAMILY TRAF domain-like 187 315 - -
Vvi3g730 672 CDD MATH 190 315 IPR002083 GO:0005515
Vvi3g730 672 ProSiteProfiles MATH/TRAF domain profile. 189 320 IPR002083 GO:0005515
Vvi3g730 672 PANTHER - 19 315 - -
Vvi3g730 672 PANTHER - 361 670 - -
Vvi3g730 672 SUPERFAMILY TRAF domain-like 33 177 - -
Vvi3g730 672 Pfam MATH domain 538 663 IPR002083 GO:0005515
Vvi3g730 672 Pfam MATH domain 51 171 IPR002083 GO:0005515
Vvi3g730 672 Pfam MATH domain 386 513 IPR002083 GO:0005515
Vvi3g730 672 Pfam MATH domain 196 315 IPR002083 GO:0005515
Vvi3g730 672 PANTHER TRAF-LIKE FAMILY PROTEIN 19 315 - -
Vvi3g730 672 PANTHER TRAF-LIKE FAMILY PROTEIN 361 670 - -
Vvi3g730 672 CDD MATH 36 169 IPR002083 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g730 - - - vvi:100259955 1298.11
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g730 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000322 1 4 0 1 0 3 1 5 3 1 2 2 2 4 7 1 2 2 1 3 4 3 7 22 21 3 8 14 6 4 137