Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g733 ATGAATTGCTTAATTCTTCAAGCTTTGCCCTTCTTACACACCTTTGAATTTATAGAAAAAACCCTTTCTTCTTCTTATAATAATAAGGTAAGCTTTGAAACTATAGCTTCTTGTTTTTTCCGTCATCCAATCCACATTGAATGGAACCTAGCGAAAAAGAAGTTTCCTCTCTTCTCTACCAAGTCCTCATTTCATATATTTTTTGGGGATCAGAGGTTTGCAGGCATGGCGGACGAAAAACTACAAGCAATATCAAGAACATTAAGATCTATCCAACCAGCCCATTACTTATTCAGGGTAGAGTCTATGTCAGTGCTTCTGGACACGAGCATTGAAAAATATGAATCAGGGTCATTCGAAGTGGGTGGCTACAAATGGAGATTGTGTCTCTACCCAAATGGGAATAAAAAAAGTGATGGGGACGGTCACATCTCCCTCTATTTAGTAATATCAGACACTCAAAATCTTCCTCTCGGGTGGGAGGTTACTGTAAGCTTCAAATTGTTTGTCTTTAATCATATACATGAAGAGTACTTAACTGTCCAAGATACTGATGGGAAGGTAAGGCACTTCAATGTGATGAAGACTCAATGTGGGTTTGCTCAGTTTCTTCCACTGGATGTTCTCACGGATCCTTGTAATGGATACTTAATGGATGACTCCTGCATTTTCGGAGCAGAAGTTTTTGTTATTAAGTATAGTGGCAAAGGGGAGTGTCTTTCCATGATAAAGGAACCTGACGATGGTACTTTCACTTGGATGATTGAGAATTTCTCCAGACTGAAACAGGAAGCCATTTACTCTGAAATATTCACTGTTAAAGATTTCAAATGGAAGTTGGTTGTCTACCCCAAAGGAAATTATAAGGCAAAGAACAAAAGCCTGTCCCTCTTTCTAGAGCTGGCTAATCGTGGAACACTTCATCATCAAAGGAAATTGTATACTGAATTCGAGTTGTTGGTAAAGGAGCAATGCAATGGTGGACATGTTAAACCATCGCATGTTAAATTAAATGGTCAGACTTGGTTCTGTGACTCGATCAAAGATTGGGGTTTTTCTAATATGATCTCTCTGAGTGATCTCAAGGACAAATCCAACCACTTCATATTAAATGATACTTTGATAGTCGAAGCAAAGATTATGCTCATGATGCATTCGAAGAATATCTAA 1170 38.29 MNCLILQALPFLHTFEFIEKTLSSSYNNKVSFETIASCFFRHPIHIEWNLAKKKFPLFSTKSSFHIFFGDQRFAGMADEKLQAISRTLRSIQPAHYLFRVESMSVLLDTSIEKYESGSFEVGGYKWRLCLYPNGNKKSDGDGHISLYLVISDTQNLPLGWEVTVSFKLFVFNHIHEEYLTVQDTDGKVRHFNVMKTQCGFAQFLPLDVLTDPCNGYLMDDSCIFGAEVFVIKYSGKGECLSMIKEPDDGTFTWMIENFSRLKQEAIYSEIFTVKDFKWKLVVYPKGNYKAKNKSLSLFLELANRGTLHHQRKLYTEFELLVKEQCNGGHVKPSHVKLNGQTWFCDSIKDWGFSNMISLSDLKDKSNHFILNDTLIVEAKIMLMMHSKNI* 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7813666 7818295 - Vvi3g733 Vvi3g733 784408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g733 389 SUPERFAMILY TRAF domain-like 248 382 - -
Vvi3g733 389 CDD MATH 95 228 IPR002083 GO:0005515
Vvi3g733 389 PANTHER - 80 387 - -
Vvi3g733 389 Pfam MATH domain 104 230 IPR002083 GO:0005515
Vvi3g733 389 Pfam MATH domain 255 380 IPR002083 GO:0005515
Vvi3g733 389 CDD MATH 249 380 IPR002083 GO:0005515
Vvi3g733 389 ProSiteProfiles MATH/TRAF domain profile. 248 380 IPR002083 GO:0005515
Vvi3g733 389 SUPERFAMILY TRAF domain-like 92 236 - -
Vvi3g733 389 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 239 386 IPR008974 GO:0005515
Vvi3g733 389 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 79 236 IPR008974 GO:0005515
Vvi3g733 389 ProSiteProfiles MATH/TRAF domain profile. 93 228 IPR002083 GO:0005515
Vvi3g733 389 PANTHER TRAF-LIKE FAMILY PROTEIN 80 387 - -
Vvi3g733 389 SMART math_3 250 361 IPR002083 GO:0005515
Vvi3g733 389 SMART math_3 100 209 IPR002083 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g733 - - - vvi:100258339 640.188
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g733 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000322 1 4 0 1 0 3 1 5 3 1 2 2 2 4 7 1 2 2 1 3 4 3 7 22 21 3 8 14 6 4 137