Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g736 ATGTCCTGTAACTATAGATCTCTTACGGGTCGATTTTCAACCCCAGCCATGGCACCACCTGCAGCTCATGAAATGCAGCAGCTAAAGAATACGCTTAGGCCTAGCAAAAGGCTTTGTTACGTATGGCTGCATGTTCTTCTTCTCTTTGCCCTCTTTGGCCTGTCTAAGTCACAGTCAATTGTCGATACGCTTCCGGGGTTTTCCGGTGAACTTCCATTCAAACTTGAAACTGGGTATGTGAGTGTAGGAGAATTGAATGATGTGGAGCTATTCTACTACTTCATCGAGTCGGAGCGCGACCCTGCTAGAGACCCTCTTATTCTCTGGCTCACCGGAGGCCCTGGTTGTTCTGGTTTCTCAGGACTAGTATACGAAATTGGTCCATTAAGATTCAACTATACAGCTTTCAATGGGAGCCTCCCAAGTTTAGAGCTGAATCCGTACTCATGGACAAAGGTTGCCAGTATAATATTTTTAGACGCACCAGTAGGCACTGGGTTCTCTTATGCAACAAATCCGGATGATTACTATGCTTCTGACACAATATCAGCCAGGGATAACTACATATTTATCAGGAAGTGGTTGATCGATCACCCCAGATTTCTATATAATCCACTTTACATTGGAGGCGATTCCTATTCGGGCATCATTGTTCCAATTCTCACTCTGGAGATAGCAAATGGTATACAAATGGGACTTAAGCCACTGATGACTCTCATGGGATATATTCTTGGCAACCCAGTAACACATTTGCATAATGATGAGAATTCAAGAATTCCATTTGCTCATAGAATAGCACTTATATCAGATGAACTCTATGAGTCAGCCAAAAATGCCTGTAAAGGTGAATTTATTGATCCAGATGAAAGCAATGGAGAGTGCATGGAGGTTCTGGCAGTTATTACAAAGTGCACTGAGAAGCTAAACAGTGCACATATTTTGGAACCCGTGTGTGCTCTTGATTCCCCAAAACCAAAGGAATCAAAACTAAAATGGAGCCTCAACCATATAGAAGATGTGTCCTCAGACATGATCAGCCTTCCAGTTCCTCAACGCAGCGAATTATGGTGTCGGAATTACAATTATTTGCTCTCTTACATATGGGAAAATGACGAGGCTGTTCAAGAAGCTCTTCATGTCCGAAATGGTACAATACCATTTTGGAAGAGGTGCAATAAGACATTAGATTATGATTCTAATGTTGTAAGCACTGTTCCATATCATCGGAATCTCTCTGACCTTGGCTATCGAGCTTTGATATACAGTGGTGATCATGACATGCTTATTCCTTATGTGGGTACCGAAAGATGGGTAAAATCTCTTAATATATCAGTTCTAAATGGTTGGGAACCATGGTTTGTTGATGGCCAAGTTGCAGGATACTCGGTAGTCTATCAAGCAAACAAAACCGAGAGTGACATAACCTATGCTACCGTAAAGGGAGGAGGTCACACAGCTCCTGAGTTCAGGCCTAAACAATGTCTTGCAATGATCGACAGGTGGCTTGCCTTTTATCCCTTGTAA 1524 42.52 MSCNYRSLTGRFSTPAMAPPAAHEMQQLKNTLRPSKRLCYVWLHVLLLFALFGLSKSQSIVDTLPGFSGELPFKLETGYVSVGELNDVELFYYFIESERDPARDPLILWLTGGPGCSGFSGLVYEIGPLRFNYTAFNGSLPSLELNPYSWTKVASIIFLDAPVGTGFSYATNPDDYYASDTISARDNYIFIRKWLIDHPRFLYNPLYIGGDSYSGIIVPILTLEIANGIQMGLKPLMTLMGYILGNPVTHLHNDENSRIPFAHRIALISDELYESAKNACKGEFIDPDESNGECMEVLAVITKCTEKLNSAHILEPVCALDSPKPKESKLKWSLNHIEDVSSDMISLPVPQRSELWCRNYNYLLSYIWENDEAVQEALHVRNGTIPFWKRCNKTLDYDSNVVSTVPYHRNLSDLGYRALIYSGDHDMLIPYVGTERWVKSLNISVLNGWEPWFVDGQVAGYSVVYQANKTESDITYATVKGGGHTAPEFRPKQCLAMIDRWLAFYPL* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7855564 7864719 - Vvi3g736 Vvi3g736 784411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g736 507 ProSitePatterns Serine carboxypeptidases, histidine active site. 474 491 IPR033124 GO:0004185
Vvi3g736 507 PRINTS Carboxypeptidase C serine protease (S10) family signature 146 158 IPR001563 GO:0004185|GO:0006508
Vvi3g736 507 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 169 IPR001563 GO:0004185|GO:0006508
Vvi3g736 507 PRINTS Carboxypeptidase C serine protease (S10) family signature 194 219 IPR001563 GO:0004185|GO:0006508
Vvi3g736 507 PRINTS Carboxypeptidase C serine protease (S10) family signature 474 487 IPR001563 GO:0004185|GO:0006508
Vvi3g736 507 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 18 34 506 - -
Vvi3g736 507 Pfam Serine carboxypeptidase 65 502 IPR001563 GO:0004185|GO:0006508
Vvi3g736 507 SUPERFAMILY alpha/beta-Hydrolases 57 504 IPR029058 -
Vvi3g736 507 Gene3D alpha/beta hydrolase 53 505 IPR029058 -
Vvi3g736 507 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 506 IPR001563 GO:0004185|GO:0006508
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g736 Vvi18g627 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g736 K16296 - vvi:100242950 1005.36