Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g740 ATGGTCCAGAGTAACTATTTATTATTGCTCAACTATAACGTCTTCTCAAGTGCCTTAATGGTGTATTTTATTACGCTTGATTGTACGTTACCATCTTTAATCAGTTCCATGGGTACAATACTAATGTACTGCCGTCTAGTTCTTGTGTTAGTCCTCTCCAGTATTGCAAGTTCGCAGTCAATCATCAAGGCACTTCCAGGATTCCCAGGAAACCTTCCCTTCAAACTTGAAACTGGGTATGTTGGAGTAGATGATATGGATGATGTGCAGTTATTCTACTACTTCGTCAAGTCTGAAAGAAATCCAAGAGATGACCCTCTATTGCTTTGGCTCACCGGAGGTCCTGGTTGTTCAGCATTTTCTGGTCTTGTATATGAAGTTGGTCCATTGTCATTCGACTATGCGAAATCCAATGAAAACTTGCCAACATTTAAATTGAACCCATACTCATGGACAAAGTTAGCCAGTATGATATTCTTGGATGCGCCCGTGGGCACTGGATTCTCCTATTCACGAACTGCAGAAGGTTACAACATGAACGACACACTATCAGCTTCACAAATCTATGCTTTTCTAAGGAAGTGGCTTATCAATCACCCCAAGTTTCAGAAAAATCCACTCTATGTCAGTGGTGACTCGTATTCAGGCATAATCATCCCCATGGTGGTTCAGGAAATATCCAATGGCAATGACGAAGGGAAAGAGCCAAAAATGAATATTCAAGGATACACGATTGGAAACCCAGTAACAGATCACTTTAGTGACTTCAATTCAAGAATTGAATACACTCATCGAGTAGGAATTCTTTCAGATGAGCTCTATGAGGAACTTAAAGAAAGCTGCAACGGGAAGTATGTATATGTAGATCCAAGCAATGTAGAATGCACAAACAATCTCAAAGTGTACACACAGTGTATCAATAAAATATATTCTGCACACATATTGGAACCTTCGTGTGCCATGTTGTCCCCAAATCCAAATGCATCAAAATTGGATCGAAGTTCCCTCCAAGAAATCAATTCCATAGGTTTACTCCTTTCTCAACCTCAAAAACCTGAACCATGGTGCCGGAGTTATAACTACGTGTTTTCCTACCTCTGGGCTAATGATAAAACCGTCCAAAAGGCTCTTCACGTTCGAGAGGCAATAAAGGACTGGGTGAGATGCAATGAAAGCTTGTCTTACACTTCTAATGTCTTCAGTTCTGTTGATTATCATCGAAATCTCACTAAGAAAGCTTATCGAGCTCTGATTTACAGTGGTGATCATGATATGCTTATTCCATATGTTGGTACACAAGCATGGATAGCATCTCTCAACTTAAATATTTCTGAAGACTGGCAACCATGGTTTGTGGATGGTCAAGTTGCAGGGTTTAGGGTTGAGTATTTACACAACAAATATCTGATGACATTTGCTACTGTAAAGGGAGCGGGTCACACAGCTCCAGAATACAGGCCTAAGGAAGGCTTTGCCATGGTTTATAGGTGGCTTGCTCACTACTTTCTCTAG 1512 40.61 MVQSNYLLLLNYNVFSSALMVYFITLDCTLPSLISSMGTILMYCRLVLVLVLSSIASSQSIIKALPGFPGNLPFKLETGYVGVDDMDDVQLFYYFVKSERNPRDDPLLLWLTGGPGCSAFSGLVYEVGPLSFDYAKSNENLPTFKLNPYSWTKLASMIFLDAPVGTGFSYSRTAEGYNMNDTLSASQIYAFLRKWLINHPKFQKNPLYVSGDSYSGIIIPMVVQEISNGNDEGKEPKMNIQGYTIGNPVTDHFSDFNSRIEYTHRVGILSDELYEELKESCNGKYVYVDPSNVECTNNLKVYTQCINKIYSAHILEPSCAMLSPNPNASKLDRSSLQEINSIGLLLSQPQKPEPWCRSYNYVFSYLWANDKTVQKALHVREAIKDWVRCNESLSYTSNVFSSVDYHRNLTKKAYRALIYSGDHDMLIPYVGTQAWIASLNLNISEDWQPWFVDGQVAGFRVEYLHNKYLMTFATVKGAGHTAPEYRPKEGFAMVYRWLAHYFL* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7935403 7950401 - Vvi3g740 Vvi3g740 784415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g740 503 Pfam Serine carboxypeptidase 66 499 IPR001563 GO:0004185|GO:0006508
Vvi3g740 503 Gene3D - 356 502 - -
Vvi3g740 503 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 18 34 502 - -
Vvi3g740 503 SUPERFAMILY alpha/beta-Hydrolases 62 501 IPR029058 -
Vvi3g740 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 147 159 IPR001563 GO:0004185|GO:0006508
Vvi3g740 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 170 IPR001563 GO:0004185|GO:0006508
Vvi3g740 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 195 220 IPR001563 GO:0004185|GO:0006508
Vvi3g740 503 PRINTS Carboxypeptidase C serine protease (S10) family signature 470 483 IPR001563 GO:0004185|GO:0006508
Vvi3g740 503 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 502 IPR001563 GO:0004185|GO:0006508
Vvi3g740 503 Gene3D alpha/beta hydrolase 56 326 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g740 K16296 SCPL-I; serine carboxypeptidase-like clade I [EC:3.4.16.-] - vvi:100258422 946.421
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g740 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000253 3 8 1 3 3 5 0 5 5 2 3 6 2 7 6 4 6 13 2 6 4 6 3 7 8 9 2 5 4 14 152