Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g741 ATGTGTTTTAGCATACTTCTTCTATTATTTTTCACCGGCGTGGCGACTTCTCAGTCCATTGTAGAGACTCTACCGGGTTTTCCTGGAAAGCTTCCCTTCAAACTTGAAACTGGATACATTAGTGTGGGAGACGTGGATGATGTGCAACTGTTCTACTACTTCATAGAGTCCGAGAGGAACCCTCGTTTGGATCCTCTTGTGCTTTGGCTCACTGGAGGCCCTGGCTGTTCTGGGTTCTCTGCTCTTGTTTATGAAATTGGTCCATTAGCTTTTGATGTAGAAGGCTATGATGGGATCTTGCCAACCCTTAAGTTGAATCCATACTCATGGACCAAGGTTGCCAGCATAATATTCATCGATGCACCTGTTGGAACCGGGTTTTCATATGCAGAAACCTCTTATGGTTACAATGTGTCAGACACATCATCAGCAGCCCAGACCTATCAGTTTCTGAGGAAGTGGTTGACATTTCACCCAAATTTTGCTGGAAATCCACTCTACATCGGTGGTGATTCCTATTCAGGCATCGTTGCCCCAATCCTCATTAAGGACATACTACATGGCCTTGAAGTCGGTCTCCAGCCAAAAATAGAACTCCAGGGATACTTGCTCGGGAATCCACTGACTGACTATTTGATTGATGACAATTCAAGAATTCCATATGCTCATCGTGTGTCCCTCATATCAGATGGACTCTACAAGGCAGCCAAAGAAACTTGCAATGGTGATTATGGGAATGTAGACATCAACAATACACTATGTGTTGAAGCTCTTCAAACTATCAAAATGTGCCTCCTACAAATAAATATTGCAATGATTTTGGAACCTCAGTGTGCTTTTGCATCCCCCCAAACAACAGAACTACAATGGGACTTGAGAGTTCAGGAAAACACTACTATGAATTACCTTCTTTCCCTATCTAGAATCCCGGAATTGCGGTGTCGGAGTTTCAGTTATGTGCTCTCCTACAAGTGGTTAAATGATATAAACGTCCAAAATGCTCTTCATGTTCAACCGGGAACTGTGAAGACTTGGAGGAGGTGCCCAAAAAGCTTCCCATCTTACACAGAAAATGTTGACAGTACTGTTGCATATCATAAGAATTTCACAAGAACAGGTCTCCGGGCTTTGATTTACAGTGGTGATCATGACCTCTCTACTCCATATATTGGTACGCTAGAATGGATAAAATCTCTTGATGTGCCTGTTTTTGATAAGTGGCGACCATGGTATGTTGATGGTCAGATTGCAGGATACACAACAAAGTTTATGAACGATCATTACCGCTTAACATATGCTACCCTAAAGGGAGCAGGCCTCACAGCTCCAGAATACAAGCACAAGGAATCTCTTGCCTTGGTTGATAGGTGGTTTGCTTATTATCCCATCTAA 1392 42.89 MCFSILLLLFFTGVATSQSIVETLPGFPGKLPFKLETGYISVGDVDDVQLFYYFIESERNPRLDPLVLWLTGGPGCSGFSALVYEIGPLAFDVEGYDGILPTLKLNPYSWTKVASIIFIDAPVGTGFSYAETSYGYNVSDTSSAAQTYQFLRKWLTFHPNFAGNPLYIGGDSYSGIVAPILIKDILHGLEVGLQPKIELQGYLLGNPLTDYLIDDNSRIPYAHRVSLISDGLYKAAKETCNGDYGNVDINNTLCVEALQTIKMCLLQINIAMILEPQCAFASPQTTELQWDLRVQENTTMNYLLSLSRIPELRCRSFSYVLSYKWLNDINVQNALHVQPGTVKTWRRCPKSFPSYTENVDSTVAYHKNFTRTGLRALIYSGDHDLSTPYIGTLEWIKSLDVPVFDKWRPWYVDGQIAGYTTKFMNDHYRLTYATLKGAGLTAPEYKHKESLALVDRWFAYYPI* 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7951097 7955705 - Vvi3g741 Vvi3g741 784416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g741 463 Pfam Serine carboxypeptidase 25 458 IPR001563 GO:0004185|GO:0006508
Vvi3g741 463 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 462 IPR001563 GO:0004185|GO:0006508
Vvi3g741 463 Gene3D alpha/beta hydrolase 14 287 IPR029058 -
Vvi3g741 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 106 118 IPR001563 GO:0004185|GO:0006508
Vvi3g741 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 129 IPR001563 GO:0004185|GO:0006508
Vvi3g741 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 154 179 IPR001563 GO:0004185|GO:0006508
Vvi3g741 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Vvi3g741 463 SUPERFAMILY alpha/beta-Hydrolases 21 460 IPR029058 -
Vvi3g741 463 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 18 ISOFORM X1 1 462 - -
Vvi3g741 463 Gene3D - 314 462 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g741 K16296 SCPL-I; serine carboxypeptidase-like clade I [EC:3.4.16.-] - vvi:100253211 959.133
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g741 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1068 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000253 3 8 1 3 3 5 0 5 5 2 3 6 2 7 6 4 6 13 2 6 4 6 3 7 8 9 2 5 4 14 152