Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g742 ATGGATGATTGCAACGCTGGAATTACCCCTACCCAATCTCACAAACTTCTTTCCTTTCATCTTTGCTTCATGATTTCCATTTTCTTCTTCCTAATATTCCCTTCTGCAACTTCATTGTCCTTCAACTTCACCACCTTTGAACCAAATAATGGTCAAATTTCCTTTGAAGGAGAGGCTCGATATTCTTCTTATGATGGCATCCAACTGACCAGAAACCAGCAGGACAAAACAATGGGTCATAGTTGGGGTCGAGCCATATATAAAGAGCAGTTGTATCTCTGGGATCGGACCTCCAGAAATCTAACTGATTTCGCTACCAATTTCTCCTTTGTCATTAATTCACTGAACAGGAGTGTTCATGCCGATGGAATAACATTCTTCCTTAACGGTACCCAATTGCCTTCAGGTAAGTTTGGAGAAAACCTTGGTCTCACGAATAACGTGACAAACACAACTGTAATTAGGTTTGTTGCAGTGGAGTTTGATACATTTTGTAACAAGGCCAAAAGGGATCCGGTGAGTGATCATGTTGGTATTGATATTAACTCTACGATATCTGTCAAAACAGTGAACTGGTCCAGCAATATAGAGGAAGGAAAGCTAAATCATGTTTCCATCCGTTACACTTCTGGTTCACAAAATCTGAGTGTTGTTCTAATTACTGAGTTTATGGACGATAAAACTACCTCCCAAAGCCTCTCCTACAAAGTTGATCTGAGGGAATACTTGCCAGAATTCGTTACTATTGGCTTCTCAGGCGCAACAGGAAATTCATTCCAGATACACAACATTTACTCGTGGAATTTCAGTTCAACTTTGCAACCTCCCAATCCTGTAGAACCAGGAGATGGAAAGAAAACAGGATTTGTGGTGGGATTGAGTGTTGGTGTAGTTGTTGTAGTATGTGGGTTGGGATTGGTTTGGCATCACTTGCGGAAGAAGAGGAATAGTGGGGGAGAAGAAAATGGTACTGACTCTGACCTAGTCATGGACGAAGACTTTGAGAAAGGTACTGGACCTAGGAAGTTTTCCTTTGACGAATTGGCTCTTGCAACCAGTAACTTTGCAGAGGAGGAAAAGCTTGGAGAGGGAGGGTTCGTATCAAGGGGGTCCAAACAAGGGATGAAGGAGTATGCAGCTGAAGTGAAGATCATCAGTATAAAATTGCTCTTGGCTTGGCCTCTTCCTAAAGAGAAGCAGGTCAGATTGGTAGAATGGGTCTGGCACCTCTATGGAGTAGGAAAGCTTGTTGATGCCGCTGATCCAAGACTATCCAACGATTTTGATGAAGAACAAATGGAACGATTGATGATTGTTGGGCTTTGGTGTGCTCACCCAGATTGCGATCTTCGACCTTCAATAAGGCAAGCAATTAATGTCCTTAATTCTGAAGCTTCACTGCCTCTTCTTCCTTTAAAAATGCCTGTGCCAATGTATTGTTCTCCTCCAGTGCTACAAACAATATCGCGTGGCGCACCCATTTCTGAGAGCAGCCACACCCAGTATTCCGACTTCTCAAATAGCACAACCTCCTCATGA 1539 42.76 MDDCNAGITPTQSHKLLSFHLCFMISIFFFLIFPSATSLSFNFTTFEPNNGQISFEGEARYSSYDGIQLTRNQQDKTMGHSWGRAIYKEQLYLWDRTSRNLTDFATNFSFVINSLNRSVHADGITFFLNGTQLPSGKFGENLGLTNNVTNTTVIRFVAVEFDTFCNKAKRDPVSDHVGIDINSTISVKTVNWSSNIEEGKLNHVSIRYTSGSQNLSVVLITEFMDDKTTSQSLSYKVDLREYLPEFVTIGFSGATGNSFQIHNIYSWNFSSTLQPPNPVEPGDGKKTGFVVGLSVGVVVVVCGLGLVWHHLRKKRNSGGEENGTDSDLVMDEDFEKGTGPRKFSFDELALATSNFAEEEKLGEGGFVSRGSKQGMKEYAAEVKIISIKLLLAWPLPKEKQVRLVEWVWHLYGVGKLVDAADPRLSNDFDEEQMERLMIVGLWCAHPDCDLRPSIRQAINVLNSEASLPLLPLKMPVPMYCSPPVLQTISRGAPISESSHTQYSDFSNSTTSS* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7987350 7989378 - Vvi3g742 Vvi3g742 784417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g742 512 Gene3D - 36 276 - -
Vvi3g742 512 Gene3D Transferase(Phosphotransferase) domain 1 384 482 - -
Vvi3g742 512 PANTHER - 398 492 - -
Vvi3g742 512 PANTHER - 23 386 - -
Vvi3g742 512 PANTHER RECEPTOR LECTIN KINASE 398 492 - -
Vvi3g742 512 PANTHER RECEPTOR LECTIN KINASE 23 386 - -
Vvi3g742 512 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 273 IPR013320 -
Vvi3g742 512 ProSitePatterns Legume lectins beta-chain signature. 157 163 IPR019825 -
Vvi3g742 512 ProSitePatterns Legume lectins alpha-chain signature. 243 252 IPR000985 -
Vvi3g742 512 CDD lectin_legume_LecRK_Arcelin_ConA 39 273 IPR001220 GO:0030246
Vvi3g742 512 Pfam Legume lectin domain 38 278 IPR001220 GO:0030246
Vvi3g742 512 SUPERFAMILY Protein kinase-like (PK-like) 400 499 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g742 - - - vvi:100265149 726.087
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g742 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8