Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g743 ATGGATGCTTGCAACGCTGGAATTACCCCCACCCAATCTCACAAACTTCTCTCCTTTCATCTTGGCTTCATGATTTCCACTTTCTTCTTCCTAATATTCCCTTCTGCAACTTCATTGTCCTTCAACTTCACCACCTTTGAACCAAATAATGGTCAAATTTCCTTTGAAGGAGAGGCTCGATATTCTTCTGATGATGACATCCAACTGACCAGAGACGTGCAGGACAAATCAATGGATTCTAGTTGGGGTCGAGCCATATATAAAGAGCAGTTGTATCTCTGGGATCGGACCTCCAGAAATCTAACTGATTTCGCTAGCAATTTCTCCTTTGTCATTAACTCACGGAACAAGAGTGCTTATGGCGATGGAATCACGTTCTTCCTTAACGGTATAAAATTGCTCTTGGCTTGGCCTCTTCCTAAAGAGAAGCAGATCAGATTGGTAGAATGGGTCTGGGACCTCTATGGAGTAGGAAAGCTTGTTGATGCCGCTGATCCAAGACTCTCGGACGATTTTGATGAAGAACAAATGGAACGATTGATGATTGTTGGGCTTTGGTGTGCTCACCCAGATTGCAATCTTCGACCTTCAATAAGGCAAGCAATTAATGTCCTTAATTCGGAAGCTTCACTACCTCTTCTTCCTTTAAAAATGCCTGTGCCAATGTATTATTCTCCTCCAGTGCTACAAACAATATCGTATGTTGGAGTAGATGATATGGACGATGTGCTGTTATTCTACTACTTCGTTGAGTCTGAAAGAAATCCAAGAGAAGACCCTCTATTGCTTTGGCTCACTGGAGGTCCTGGTTGTTCTGCATTTTCTGGTCTTGCATGCGAAGTTGGTCCATTTGAGTATGATATTCTTGGATGCACCCATTGGCACTGGATTATCCTATTCGCGATCGGTACAAGGTTACAACATCTTATGTTTTTTCTTTTCCCTTTTTGTATTGTGACTGAGTGGCTTATTAATCACCCCAAGTTTAAGAAAAATCCACTTTATTTCAGTGGTTACTCATATTCAGGCATAATCATCCCCATGACGGTTGAGGACATATCCAATGGTATCTCTGATTTACAGGTACTGTCTCACAAAATATTTTGTTTGTTTGTTCTTGTTTGTTGTACCAATATACAAGCCTTGAAAACGAAGGCCAAGATTCTGCCTTCACAGTTCCATACAACATTTTCTCGGCAACAAACCATCATTTCAAGCCATTCCCAGCACGGCCACCACCAGCTGCGGAGAGAGATTAGCTTCATTTGTTGCAGCAGTTCCATGGGTACAATACCATTAATGTACTGTCGTCTATTTCGTGTGCTAGTCCTCTCCAGTATTGCAAGTTCGCAGTCAATCATCAAGACACTTCCAGGATTCCCAGGAAATATTCCCTTCAAACTTGAAACTGGGTATGTGGGAGTAGATGATATGGATGATGTGCAGTTATTCTACTACTTCGTTGAGTCTGAAAGAAATCCAAGGTAG 1488 41.87 MDACNAGITPTQSHKLLSFHLGFMISTFFFLIFPSATSLSFNFTTFEPNNGQISFEGEARYSSDDDIQLTRDVQDKSMDSSWGRAIYKEQLYLWDRTSRNLTDFASNFSFVINSRNKSAYGDGITFFLNGIKLLLAWPLPKEKQIRLVEWVWDLYGVGKLVDAADPRLSDDFDEEQMERLMIVGLWCAHPDCNLRPSIRQAINVLNSEASLPLLPLKMPVPMYYSPPVLQTISYVGVDDMDDVLLFYYFVESERNPREDPLLLWLTGGPGCSAFSGLACEVGPFEYDILGCTHWHWIILFAIGTRLQHLMFFLFPFCIVTEWLINHPKFKKNPLYFSGYSYSGIIIPMTVEDISNGISDLQVLSHKIFCLFVLVCCTNIQALKTKAKILPSQFHTTFSRQQTIISSHSQHGHHQLRREISFICCSSSMGTIPLMYCRLFRVLVLSSIASSQSIIKTLPGFPGNIPFKLETGYVGVDDMDDVQLFYYFVESERNPR* 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7999218 8021041 - Vvi3g743 Vvi3g743 784418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g743 495 Gene3D alpha/beta hydrolase 316 370 IPR029058 -
Vvi3g743 495 Pfam Legume lectin domain 38 129 IPR001220 GO:0030246
Vvi3g743 495 Gene3D alpha/beta hydrolase 224 294 IPR029058 -
Vvi3g743 495 Gene3D alpha/beta hydrolase 448 495 IPR029058 -
Vvi3g743 495 SUPERFAMILY Concanavalin A-like lectins/glucanases 13 133 IPR013320 -
Vvi3g743 495 Gene3D - 6 133 - -
Vvi3g743 495 Pfam Serine carboxypeptidase 228 286 IPR001563 GO:0004185|GO:0006508
Vvi3g743 495 Pfam Serine carboxypeptidase 458 494 IPR001563 GO:0004185|GO:0006508
Vvi3g743 495 Pfam Serine carboxypeptidase 319 359 IPR001563 GO:0004185|GO:0006508
Vvi3g743 495 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 18 426 495 - -
Vvi3g743 495 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 18 227 286 - -
Vvi3g743 495 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 18 319 367 - -
Vvi3g743 495 SUPERFAMILY alpha/beta-Hydrolases 450 494 IPR029058 -
Vvi3g743 495 Gene3D Transferase(Phosphotransferase) domain 1 134 223 - -
Vvi3g743 495 SUPERFAMILY alpha/beta-Hydrolases 224 358 IPR029058 -
Vvi3g743 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 319 367 IPR001563 GO:0004185|GO:0006508
Vvi3g743 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 426 495 IPR001563 GO:0004185|GO:0006508
Vvi3g743 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 227 286 IPR001563 GO:0004185|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g743 - - - vvi:100244573 268.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g743 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8