Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g747 ATGATTTCCACTTTCTTCTTCCTAATATTCCCTTCTGCAACTTCATTGTCCTTCAACTTCACCACCTTTGAACCAAATAATGGTCAAATTTCCTTTGAAGGAGAGGCTCGATATTCTTCTGATGATGACATCCAACTGACCAGAGACGTGCAGGACAAATCAATGGATTCTAGTTGGGGTCGAGCCATATATAAAGAGCAGTTGTATCTCTGGGATCGGACCTCCAGAAATCTAACTGATTTCGCTACCAATTTCTCCTTTGTCATTAACTCACGGAACAAAAGTGCTTATGGCGATGGAATCACGTTCTTCCTTAACGGTACCCAATTGCCTTCAAATGTATCGGGAGAAAACCTTGGTCTCACGAAGGATAACGTGACAAACACAACTGTAATTAGTTTTGTTGCAGTGGAGTTTGATACATTTTCAAACAAGGCCAAAAGGGATCCGGTGAGTGATCATGTTGGTATTGATATTAACTCTACGATATCTGTCAAAACAGTGAACTGGTCCAGCAATATAGGGGAAGGAAAGCTAAATCATGTTTCCATCCGTTATACTTCTAGTTCACAAAATCTGAGTGTCGTTCTAATTACTGAGTTTATGGACAATAAAACTACCTCCCAAAGCCTCTCCTACAAAGTTGATCTGAGGGAATACTTGCCAGAATTCGTTACTATTGGCTTCTCAGGCGCAACAGGAAAAGCAGTCCAGATAAACAACATTTACTCGTGGAATTTCAGTTCAACTTTGCAACCTCCCAATCCTGTAGAACCAGGAGATGGAAAGAAAACAGGATTTGTGGTGGGATTGAGTGTTGGTGCAGTTGTTGTAGTATGTGGGTTGGGATTGGTTTGGCATCACTTGAGGAAGAAGAGGAATAATGGTGGAGAAGAAAATGGTACTGACTCTGACCTAGTCATGGACGAAGACTTTGAGAAGGGTACTGGACCTAGGAAGTTTTCCTTTGACGAATTGGCTCTTGCAACCAGTAACTTTGCGGAGGAGGAAAAGCTTGGAGAGGGAGGGTTCGTATCAAGGGGGTCCAAACAAGGGATGAAGGAGTACGCATCTGAAGTGAAGATCATCAGTATAAAATTGCTCTTGGCTTGGCCTCTTCCTAAAGAGAAGCAGGTCAGATTGGTAGAATGGGTCTGGGACCTCTATGAAGTAGGAAAGCTTCTTGATGCGGCTGATCCAAGACTATCGGGCGATTTTGATGAAGAACATATGGAACGATTGATGATTGTTGGGCTTTGGTGTGCTCACCCAGATTGCAATCTTCGACCTTCAATAAGGCAAGCAATTAATGTCCTTAATTTGGAAGCTTCACTACCTCTTCTTCCTTTAAAAATGCCTGTGCCAATGTACACAACAATTACTTATAGGTGTAGTATAATATAG 1404 42.02 MISTFFFLIFPSATSLSFNFTTFEPNNGQISFEGEARYSSDDDIQLTRDVQDKSMDSSWGRAIYKEQLYLWDRTSRNLTDFATNFSFVINSRNKSAYGDGITFFLNGTQLPSNVSGENLGLTKDNVTNTTVISFVAVEFDTFSNKAKRDPVSDHVGIDINSTISVKTVNWSSNIGEGKLNHVSIRYTSSSQNLSVVLITEFMDNKTTSQSLSYKVDLREYLPEFVTIGFSGATGKAVQINNIYSWNFSSTLQPPNPVEPGDGKKTGFVVGLSVGAVVVVCGLGLVWHHLRKKRNNGGEENGTDSDLVMDEDFEKGTGPRKFSFDELALATSNFAEEEKLGEGGFVSRGSKQGMKEYASEVKIISIKLLLAWPLPKEKQVRLVEWVWDLYEVGKLLDAADPRLSGDFDEEHMERLMIVGLWCAHPDCNLRPSIRQAINVLNLEASLPLLPLKMPVPMYTTITYRCSII* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8120761 8124112 - Vvi3g747 Vvi3g747 784422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g747 467 PANTHER - 376 458 - -
Vvi3g747 467 PANTHER - 5 364 - -
Vvi3g747 467 PANTHER RECEPTOR LECTIN KINASE 376 458 - -
Vvi3g747 467 PANTHER RECEPTOR LECTIN KINASE 5 364 - -
Vvi3g747 467 CDD lectin_legume_LecRK_Arcelin_ConA 16 251 IPR001220 GO:0030246
Vvi3g747 467 ProSitePatterns Legume lectins alpha-chain signature. 221 230 IPR000985 -
Vvi3g747 467 Gene3D Transferase(Phosphotransferase) domain 1 362 461 - -
Vvi3g747 467 ProSitePatterns Legume lectins beta-chain signature. 135 141 IPR019825 -
Vvi3g747 467 Pfam Legume lectin domain 15 256 IPR001220 GO:0030246
Vvi3g747 467 Gene3D - 13 254 - -
Vvi3g747 467 SUPERFAMILY Concanavalin A-like lectins/glucanases 14 251 IPR013320 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g747 - - - vvi:100244573 689.878
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g747 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8