Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g758 ATGGAATTTGAATCAATAAGAATTCAGTACATAATGGTAGTGAAAGTTTCAGATGATAGTGGTGAAGCTTGCCTTGCTCTGTTTAATGAACAAGCAGAGAGAATATTTGGGTGCTCTGCTGATGAGCTTGATAAGCTTAAATCACAGGAGGGAGAGGAGAACCGATTCCAGCAGAAATTGAAGGAAGCTATTTGGGTCCCTCATCTTTTCCGGATTAGTGTTGCACAACATGAATACATGAATGAGAAAAGGCAGTGGATAACAGCCAGGGCTGTTGTGGCAGTTGATTTTGCAGCTGAATCCAGATTATTGTTGGAGGAGATATCAAAGATGAAGACTTCACAATAG 348 40.52 MEFESIRIQYIMVVKVSDDSGEACLALFNEQAERIFGCSADELDKLKSQEGEENRFQQKLKEAIWVPHLFRISVAQHEYMNEKRQWITARAVVAVDFAAESRLLLEEISKMKTSQ* 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8239783 8241124 - Vvi3g758 Vvi3g758 784433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g758 115 CDD RPA1_DBD_C 2 110 IPR013955 -
Vvi3g758 115 Pfam Replication factor-A C terminal domain 2 104 IPR013955 -
Vvi3g758 115 PANTHER REPLICATION FACTOR A 1, RFA1 5 109 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi3g758 115 SUPERFAMILY Nucleic acid-binding proteins 3 111 IPR012340 -
Vvi3g758 115 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 109 - -
Vvi3g758 115 Gene3D - 2 113 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g758 K07466 RFA1, RPA1, rpa; replication factor A1 - vri:117933368 227.639
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g758 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .