Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g763 ATGGGGAAGGAGAAGCACTACTGGCTGCTCAAGACAGAGCCTGGAGAGTGGTCATGGGAGGACCAAGCTGCCAACGAAGGCTTATCAAACTGGGACGGAGGCGACGGCGGTGCTGGTGGTGCTGTGGATGTGAGGTGTGTGGGGGAGATGAGGAGGGCGGTGGACTTAGGGGAGATGAAGAAGGAGAGTGGGCTGAAGGGGTTTGGGCTGTTCCGGCAGCCGCGGCTGTCGGTGGTTCCGGTGCCGGAGGAGGTGTGGAAGAGGGTCTGCGAGATGGGAGGTGGGTATGAAGGGGACGGGGGGGAATCTGGAGATGCGGAGGTGGGTGATGATGGCGGTGGAAGTGAAGGGGGACGGAGCAAAATTGAAATGCAAGCCCTAGGAGGAGGATATCGATTTGCAGAGCTGCTGCCACGGTCATGGCGAAGATCCACTGCCCTCCGATCATTTTCTTCTTCATCCTCATTCTTCTCCGACCAGTCTCGTGGTGGTCTCCCTCGATTCTTCTCCGAAGTTCTCCCTCCTTCCAAGGGTGGTATTGTACGTGTACAGGGTGATGAATTCTGGCACATGACTAAAGTTTTAAGATTGAGTGTGAATGATAGGGTAGAGCTCTTCAATGGGAAAGGAGGATTGGTGGAAGGAAGCATTAATAGAATTGATCGCACTGGACTTGATTTTATCGCTTTGGAAGATCCAAAATTAGTGCTTCCACAAAGCTCACGGTGGCATGTGTTTGCAGCTTTTGGGACTTTAAAGGGTGGTCGAGCTGACTGGCTGGTTGAAAAGTGCACAGAGTTGGGGACCAGTAGTGTAACCCCTTTGCTGACGGAACGTTCTCCTTCAATTTCAGAAAATCGGGTGGATCGATTGCAACGTGTCATTCTAGCTGCTGCTAAGCAATGTCAACGTCTGCATGAAATGACTCTGAATCCTCCTACAACAATCGATAGCCTCTTACCTATTGTCACCCAATCAAAGCTATCCTTGGTGGCTGTTGCAGAAGCTACTCCTGTTTTTAGTGTGTTGACTTCATCAAGAAGAGAATCTACTGGGCTAATGATAATTGGTCCGGAAGGGGACTTCACTGAGAAAGAGCTGAATATGATGAGGGAAGCAGGTGCTACAGCTGTTGGTCTTGGGCCTCACCGACTACGGGTTGAAACTGCAACAATAGCACTTTTAGCAACTTTAATGCTATGGTCCGACTCTGAGAGGCCATCTGAACCCTAG 1233 51.01 MGKEKHYWLLKTEPGEWSWEDQAANEGLSNWDGGDGGAGGAVDVRCVGEMRRAVDLGEMKKESGLKGFGLFRQPRLSVVPVPEEVWKRVCEMGGGYEGDGGESGDAEVGDDGGGSEGGRSKIEMQALGGGYRFAELLPRSWRRSTALRSFSSSSSFFSDQSRGGLPRFFSEVLPPSKGGIVRVQGDEFWHMTKVLRLSVNDRVELFNGKGGLVEGSINRIDRTGLDFIALEDPKLVLPQSSRWHVFAAFGTLKGGRADWLVEKCTELGTSSVTPLLTERSPSISENRVDRLQRVILAAAKQCQRLHEMTLNPPTTIDSLLPIVTQSKLSLVAVAEATPVFSVLTSSRRESTGLMIIGPEGDFTEKELNMMREAGATAVGLGPHRLRVETATIALLATLMLWSDSERPSEP* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8281114 8302826 - Vvi3g763 Vvi3g763 784438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g763 410 SUPERFAMILY alpha/beta knot 241 402 IPR029028 -
Vvi3g763 410 Gene3D - 164 407 IPR029026 -
Vvi3g763 410 Pfam EVE domain 41 92 IPR002740 -
Vvi3g763 410 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 181 399 IPR006700 GO:0006364|GO:0008168
Vvi3g763 410 CDD RsmE-like 248 396 IPR046886 -
Vvi3g763 410 MobiDBLite consensus disorder prediction 96 121 - -
Vvi3g763 410 Gene3D ph1033 like domains 37 102 - -
Vvi3g763 410 SUPERFAMILY PUA domain-like 6 94 IPR015947 -
Vvi3g763 410 Pfam RNA methyltransferase PUA domain 184 227 IPR046887 -
Vvi3g763 410 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 165 408 IPR006700 GO:0006364|GO:0008168
Vvi3g763 410 Pfam RNA methyltransferase domain 242 398 IPR046886 -
Vvi3g763 410 SUPERFAMILY PUA domain-like 169 227 IPR015947 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g763 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] - vvi:100258322 534.643
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g763 Blo02g00922 Blo03g00061 . . . . . . Cmo19g00555 . . . . . . . Cpe15g00430 . . . . . . . Cla02g00696 Cam02g0729 Cec02g0744 Cco02g0768 Clacu02g0740 Cmu02g0735 Cre02g1048 . . Cone3ag1042 . Lsi03g00598 Csa07g00671 . Cme01g00133 . . . . . . . . Sed07g1141 Cmo04g00467 . . Cma19g00541 . Car19g00398 . . Bhi11g01118 Tan01g0612 Cmetu07g1601 . . Mch10g0413 . . . . . . . . . . Chy01g00144 Cme07g02206
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011527 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 5 1 31