Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g766 ATGGGTAATCCTTCAATTGAAGCTGCCATAAAGCTTGAGAAGAAGAGAGCCGACAGGAAGCTCAAGGAGCTCGATAGAGAAAGTAGTGACAACCCAGTCGTGGGGCTGTTTAATAGAGTGGTTCGTGATAGTCTGGCTAGAGAGAAAGAGAGGCTGGAGAAGGCAGAGGAGGCTTTCAAGGCTCTTGATCTTAACAAGTTAAAGAACTGTTTTGGGTTTGATACATTTTATGCAACTGATGTTCGGAGGTTTGGAGATGGGGGAATTTTTATTGGGAATTTGAGGAGACCCATTGAAGAAGTCATTCCTAAATTGGAGAAAAAACTCTCTGAAGCAGCAGGGAGGGAGGTTGTTTTATGGTTCATGGAGGAAAAGGCAAATGACATTACAAAACAGGTTTGCATGGTGCAGCCGAAGGCAGAAATGGATCTACAATTTGAGTCAACCAAGCTGAGCACTCCTTGGGGTTATATTAGTTCAATAGTCTTATGTGTTGCAACTTTTGGAACCATAGCTCTAATGAGTGGCTTCTTCCTTAAACCCAATGCAACATTTGATGACTACCTGGCCGATGTTGTGCCTCTGTTTTCTGGCTTTGTTACCATTTTGGGAGTTTCTGAGATAGCCACAAGGGTAACAGCAGCTCGTTATGGTGTTAAACTCAGCCCATCATTTCTTGTGCCATCTAACTGGACAGGGTGCCTGGGAGTTATGAACAACTATGAGTCATTGCTTCCAAACAAGAAAGCGCTTTTTGATATTCCTGTTGCTCGAACAGCTAGTGCCTACATTACGTCGCTGGTGCTAGCAGTTGCTGCTTTTATTGCTGATGGAAGCTTTAATGGGGGTGACAATGCATTGTACATAAGGCCCCAATTCTTTTATAACAACCCTTTGCTTTCTTTCATCCAGTTTGTCATTGGACCTTACACGGATGATCTTGGGAATGTACTTCCATATGCAGTAGAAGGTGTGGGAGTTCCTGTTGATCCCCTTGCTTTTGCTGGACTCTTAGGAATGGTGGTGACTTCTTTGAACTTGTTGCCGTGTGGAAGACTTGAAGGAGGCCGCATTGCGCAAGCTCTGTTTGGGAGAAACATTGCTACTTTGCTATCTTTTGGCACATCACTCTTGCTGGGAATTGGTGGCCTGAGTGGAAGCGTCCTCTGTTTAGCATGGGGGTTGTTTGCAACCTTCTTCCGGGGCGGAGAAGAAGTACCAGCAACAGATGAGATCACCCCATTGGGAGATGACAGGTATGCTTGGGGATTTGTCCTTGCCCTCATCTGTTTCCTCACTCTTTTCCCTAATGGTGGAGGGACATTCTCCAGCTCATTTTTCAGTGATCCATTCTTCAGGGGTGATCTGTAA 1371 45.08 MGNPSIEAAIKLEKKRADRKLKELDRESSDNPVVGLFNRVVRDSLAREKERLEKAEEAFKALDLNKLKNCFGFDTFYATDVRRFGDGGIFIGNLRRPIEEVIPKLEKKLSEAAGREVVLWFMEEKANDITKQVCMVQPKAEMDLQFESTKLSTPWGYISSIVLCVATFGTIALMSGFFLKPNATFDDYLADVVPLFSGFVTILGVSEIATRVTAARYGVKLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYITSLVLAVAAFIADGSFNGGDNALYIRPQFFYNNPLLSFIQFVIGPYTDDLGNVLPYAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQALFGRNIATLLSFGTSLLLGIGGLSGSVLCLAWGLFATFFRGGEEVPATDEITPLGDDRYAWGFVLALICFLTLFPNGGGTFSSSFFSDPFFRGDL* 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8343092 8347919 + Vvi3g766 Vvi3g766 784441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g766 456 PANTHER ZINC METALLOPEPTIDASE EGY3, CHLOROPLASTIC-RELATED 1 454 - -
Vvi3g766 456 Coils Coil 7 27 - -
Vvi3g766 456 PANTHER ZINC METALLOPROTEASE EGY1 1 454 IPR044838 -
Vvi3g766 456 Coils Coil 38 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g766 K25380 EGY; zinc metalloprotease EGY, chloroplastic [EC:3.4.24.-] - vvi:100241185 853.973
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g766 Blo02g00919 . . . . . Bma05g00641 . . . . . . . . . . . . . . . . . Cla10g00963 Cam10g0986 Cec10g1017 . Clacu10g1008 Cmu10g1791 Cre10g1164 . . . Cone10ag1060 . . . . . . . . . Bpe05g00462 . . Sed07g1144 Cmo04g00464 . . . . . . Cpe01g00389 Bhi11g01104 Tan01g0607 Cmetu07g1105 . . Mch10g0410 . . . . . . . . Lsi03g01008 . . Cme07g02209
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009933 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32