Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g771 ATGAAATATCGTTGTTTAACCCTTACACAAAAGCATCCAATCTTCCCATCTCCAAACGCTGCGTTTCGGTGGATCTCTACCCCGATCACTGTTTGCAGACAAGAATTCAGTCATCCCTTCTCCAAACGCTGCGTCTCGTTGATCTCTGAGTTAAAGGAGAAGATAATGGATATGAATGTTGACCATTACAATGTTTTGGGATTACCATCGGGTGAGGAAGGAGCCAAATTATCAGAGAAAGAGATTTCAAAAGCCTACAGAGTGAAGGCTTTGGAGTTGCACCCAGATAAGAGGCCAGATGATCCCCAAGCCCATGCAAACTTCCAGAAGCTAAAAACCTCCTATGAGATTCTCAAGGATGAAAAAGCAAGGAAGTTGTTTGACGACCTTCTACGAGTGAAACGTGAGCAGTTCCACCGACAAGCACAGTATGATGTTAAAAGGAGGAGGATGGTTTCTGATCTAGAGGAAAGAGAGCGGGCGGCTAATGCTCCTGACCCAGCTTCTAAAGCCCGAGAAGAAGAGGAAAGAATTACTAAGAAGCTAAAAGAAGAAATTGCTAGAATACGTGCAATGCATGCAAATAAGGGAGCATCAGGCTCAAGGAAAGAGGCACCAGGAACAAGAAAGGAGAGTGTAGCTGATGGTGGAGGTGGTTTGAACAAGGAGAAAGTGCTAAAGGTCTCTTGGGAGAAGGGTGGGGAGGATTACACTGCAGAGGGATTGAGGGAGGTGTTTGCGAAGTTTGGTGAGGTTGAAGATGTTGTTCTCAAGAGTTCCAGGAAGAAAGGTTCAGCACTTGTTGTGATGGCCTCTAAAGAAGCAGCTGTGGCTGCTACTGGAAATGTGTGTGGTCATATTTCAAATCCATTACTTGTGCTTCCACTTGAACCAGCTGTGGTTATGGAGTTTCCCCCAAGGTCCATGGAGCCTGAGCCCTCAAGTAATCTGGTTGGAGCTGGATATCAATCATTTGAAGAATCTGTTTTAAAGAAACTTCAAAAGGCTGCAGAAAAGCAGAAGTGA 1026 44.93 MKYRCLTLTQKHPIFPSPNAAFRWISTPITVCRQEFSHPFSKRCVSLISELKEKIMDMNVDHYNVLGLPSGEEGAKLSEKEISKAYRVKALELHPDKRPDDPQAHANFQKLKTSYEILKDEKARKLFDDLLRVKREQFHRQAQYDVKRRRMVSDLEERERAANAPDPASKAREEEERITKKLKEEIARIRAMHANKGASGSRKEAPGTRKESVADGGGGLNKEKVLKVSWEKGGEDYTAEGLREVFAKFGEVEDVVLKSSRKKGSALVVMASKEAAVAATGNVCGHISNPLLVLPLEPAVVMEFPPRSMEPEPSSNLVGAGYQSFEESVLKKLQKAAEKQK* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8416041 8423780 - Vvi3g771 Vvi3g771 784446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g771 341 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Vvi3g771 341 Coils Coil 168 192 - -
Vvi3g771 341 MobiDBLite consensus disorder prediction 191 218 - -
Vvi3g771 341 Pfam DnaJ domain 61 128 IPR001623 -
Vvi3g771 341 SMART dnaj_3 60 123 IPR001623 -
Vvi3g771 341 ProSiteProfiles dnaJ domain profile. 61 131 IPR001623 -
Vvi3g771 341 SUPERFAMILY Chaperone J-domain 23 127 IPR036869 -
Vvi3g771 341 CDD DnaJ 61 120 IPR001623 -
Vvi3g771 341 SUPERFAMILY RNA-binding domain, RBD 236 282 IPR035979 GO:0003676
Vvi3g771 341 Gene3D DnaJ domain 48 155 IPR036869 -
Vvi3g771 341 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 298 IPR000504 GO:0003723
Vvi3g771 341 Coils Coil 330 341 - -
Vvi3g771 341 CDD RRM_DNAJC17 224 296 IPR034254 -
Vvi3g771 341 PANTHER DNAJ DOMAIN CONTAINING PROTEIN, EXPRESSED 56 341 - -
Vvi3g771 341 PRINTS DnaJ domain signature 63 81 IPR001623 -
Vvi3g771 341 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vvi3g771 341 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vvi3g771 341 MobiDBLite consensus disorder prediction 152 177 - -
Vvi3g771 341 PANTHER DNAJ DOMAIN CONTAINING PROTEIN, EXPRESSED 56 341 - -
Vvi3g771 341 Gene3D - 218 300 IPR012677 -
Vvi3g771 341 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 281 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g771 K09537 DNAJC17; DnaJ homolog subfamily C member 17 - vvi:100261697 535.798
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .