Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g773 ATGATTGATACTGAGGGCGGTCAGATCCATGTGGTTGATCATGGGGCTCCTTTCTCTGTCAAAGCCGAGAATGAGTCGATCTGGTTGTTCACCACTCAAAAATTTGAGGGTTCTCGTCCATTCACTGTTCAAGCAAACTATGAAGGATTTTCCGAAGGTATTACAGTGGGTGATGAAGTTGTTATTGACGGTGGAATGGCAAGCTTTGAAGTAATCGAAAAGATCGGGAATGATTTGCGTTGTAAGTGCACAGATCCTGGTCTTCTCCTACCTCGTGCCAAGTTGAGCTTTTGGAGAGATGGAAAGCTGGTGGAGAAAAATTATGAGCTTCCCACCATATCAACCAAGGACTGGGCTGATATCGAGTTTGGAATTTCTGAAGGTGTTGATTTCATTGCAATGTCATTTGTGAAGGATGCCAATGCCATCAAGCAACTCAAGAGCTACCTCTCCAACAAATCATCCAAATCTATAGGAGTTCTGGCAAAAATTGAGAGCTTGGAGTCACTTCAGCACTTGGAAGAGATCATAGAAGCTTCTGATGGTATCATGGTGGCACGTGGTGATCTTGGAGTTGAGATCCCACTTGAACAGATTCCAGTAGTCCAAGCGAAGATAACCCATGTTTGCAGACAACTAAACAGGCCTGTTATAGTTGCTTCTCAACTCCTTGAGTCAATGGTTGAATATCCAACACCAACCCGTGCAGAGGTTGCAGATGTTTCTGAAGCTGTTCGACAGTATGCTGATGCCTTAATGCTGTCTGGTGAGTCAGCTATTGGTTCATACGGACAGAAGGCACTCTGTGTCTTGCGGATGGCCAGCAGCAGAATGGAACTATGGAGTCGTGAGGAGAACCGCCAAAGTGCACTGCATCAGCGACAGCTTGGAGTATCTTTGCCTGACCGGATAGCTGAGCAGATTTGCAACTGTGCTGTGGAAATGGCCGACAACCTTGGTGTGGATGCCATCTTTGTATACACAAAGCATGGTCAAATGGCATCACTCTTGTCACGCAACCGTCCAAACTCTCCCATATTTGCCTTCACTGACAACCACAGCACCCGAATGAGTATGAATCTGCAATGGGGAGTCACCCCTCTTCTTGTTGAATTATCAGAGGACATGGAAGCTAACATCACAAAAACCATTGATCTCATAAAAATGAAGGGGGTATTGGAAGAGGGCGACACGGTTTTGGTGGTCTCAGATATCACTCCATCTTGTGCAACCCCAAAGGCTTTCCAGTCAATCCAAGTGAAGACCATTGTCTAG 1275 45.8 MIDTEGGQIHVVDHGAPFSVKAENESIWLFTTQKFEGSRPFTVQANYEGFSEGITVGDEVVIDGGMASFEVIEKIGNDLRCKCTDPGLLLPRAKLSFWRDGKLVEKNYELPTISTKDWADIEFGISEGVDFIAMSFVKDANAIKQLKSYLSNKSSKSIGVLAKIESLESLQHLEEIIEASDGIMVARGDLGVEIPLEQIPVVQAKITHVCRQLNRPVIVASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGSYGQKALCVLRMASSRMELWSREENRQSALHQRQLGVSLPDRIAEQICNCAVEMADNLGVDAIFVYTKHGQMASLLSRNRPNSPIFAFTDNHSTRMSMNLQWGVTPLLVELSEDMEANITKTIDLIKMKGVLEEGDTVLVVSDITPSCATPKAFQSIQVKTIV* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8431960 8436443 - Vvi3g773 Vvi3g773 784448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g773 424 Gene3D - 274 421 IPR036918 -
Vvi3g773 424 TIGRFAM pyruv_kin: pyruvate kinase 1 420 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g773 424 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 110 279 IPR015813 GO:0003824
Vvi3g773 424 PANTHER PYRUVATE KINASE 1 423 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g773 424 Gene3D - 1 271 IPR040442 -
Vvi3g773 424 Pfam Pyruvate kinase, alpha/beta domain 306 405 IPR015795 -
Vvi3g773 424 ProSitePatterns Pyruvate kinase active site signature. 158 170 IPR018209 GO:0004743|GO:0006096
Vvi3g773 424 PRINTS Pyruvate kinase family signature 129 143 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g773 424 PRINTS Pyruvate kinase family signature 160 186 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g773 424 PRINTS Pyruvate kinase family signature 187 211 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g773 424 PRINTS Pyruvate kinase family signature 212 236 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g773 424 PRINTS Pyruvate kinase family signature 237 255 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g773 424 PRINTS Pyruvate kinase family signature 256 272 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g773 424 SUPERFAMILY PK C-terminal domain-like 300 406 IPR036918 -
Vvi3g773 424 Gene3D - 8 110 IPR015806 GO:0004743|GO:0006096
Vvi3g773 424 Pfam Pyruvate kinase, barrel domain 2 274 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi3g773 424 SUPERFAMILY PK beta-barrel domain-like 20 98 IPR011037 -
Vvi3g773 424 PANTHER PYRUVATE KINASE 1 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g773 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - vvi:100244565 823.928
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g773 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00959 Cam10g0982 Cec10g1013 . Clacu10g1004 Cmu10g1787 Cre10g1160 . . . . . . . . . . . . . . . . Sed13g0418 Cmo04g00460 Cmo16g00321 . . . . Cpe14g00251 Cpe01g00386 Bhi11g01099 Tan01g0602 Cmetu07g0067 . . Mch10g0406 . . . . . . . . Lsi03g01004 . . Cme07g02213
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012138 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 30