Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g776 ATGGCTGTTTCTTCAAACGGGTCTCCCTCACCTTCGCCGGTCACAAGCAGATCAAACCCCAATTCAAGAAACTCAGAAATCAACAATACTCTCCGAAGGAGTTTCAGTGGAAATCCATTCACCAAGCCTTCAATCGTCGCTAACCCGAGAGGCTTTAATCCTGTTACACCTGCTAACAGTCCTTCAGATTTTCCACGAAGATACTCCATTGCAAAAGAAGGTGGTGTTCCTCCACACCAATATGAGAAAGAGAATGAGAAAGATCAGAATGCAAAACCAGTGAGAATCAGATCACCAGCTGTTTCAAAGGGTACAAAGAACTTCATGTCCCCAACTATCTCTGCTGCTTCCAAGATTGCTGCCTCTCCCAAAAAGAAAGTGTTGCTTGAGAGGAACGAACTGATTCGAACTTCATTGTCATCATTTTCAGATGGGAAAAGTCCTCTTAGTCCATTGAATCTCCAGGAAGTGGTTGAAGATTCTGATTCAAAAATGACTCTGAATCCTTATCAGAGACCATAA 522 42.91 MAVSSNGSPSPSPVTSRSNPNSRNSEINNTLRRSFSGNPFTKPSIVANPRGFNPVTPANSPSDFPRRYSIAKEGGVPPHQYEKENEKDQNAKPVRIRSPAVSKGTKNFMSPTISAASKIAASPKKKVLLERNELIRTSLSSFSDGKSPLSPLNLQEVVEDSDSKMTLNPYQRP* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8657004 8658460 - Vvi3g776 Vvi3g776 784451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g776 173 MobiDBLite consensus disorder prediction 77 93 - -
Vvi3g776 173 MobiDBLite consensus disorder prediction 1 43 - -
Vvi3g776 173 PANTHER TRANSMEMBRANE PROTEIN 1 158 - -
Vvi3g776 173 MobiDBLite consensus disorder prediction 139 173 - -
Vvi3g776 173 MobiDBLite consensus disorder prediction 1 109 - -
Vvi3g776 173 PANTHER TRANSMEMBRANE PROTEIN 1 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g776 - - - vvi:104878843 319.701
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g776 Blo02g00915 . . . . . . Bma12g00305 . . . . . . . . . . . . . . . . Cla10g00958 Cam10g0981 Cec10g1012 . Clacu10g1003 Cmu10g1786 Cre10g1159 . . Cone3ag1049 Cone10ag1065 . . . . . . . . . . . . Sed13g0417 Cmo04g00459 Cmo16g00320 . . . . Cpe14g00250 Cpe01g00385 Bhi11g01098 Tan01g0601 Cmetu07g1160 . Hepe07g0391 Mch10g0405 . . . . . . . . Lsi03g01003 . . Cme07g02214
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005958 3 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 1 37