Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g777 ATGTCCTTGTTTCTCAGAGCCTTTCCTCTCATAGCTCTTCGCTCCAAACCCTTCCCTCTCTGCCGCACCATTTTCAAACTCAATCCAAAACTACTCCCGAACAGAACCATTTCCTATGCTTCTGCTTCTTTTTCAACAGAAACCCAAATTTCCGATCCCAAACCCTCCATAATCCTCAAGGACACTCTTCAATGGGTCAGCCGAACCGGATTTTGCGGCGAATTATCTGTTGACGATGTGGGCAAACGGGTCCGCATCTGTGGGTGGGTTGCGCTTCACCGTGTCCATGGAGGTCTCACTTTCCTCAATCTACGCGACCATACCGGTATCGTTCAGGTTACAACCCTTCCCGATGAGTTCCCCAAAGCACATTCTACCGTGAATGAGTTGAGACTTGAGTATGTGATTGCTGTAGAAGGCATTGTTCGATCTCGGCCAAGTGAGTCAATCAATAAGAAAATGAGAACTGGCTTAATTGAGGTTGCTGTGGAGCATGTCCAAGTGTTGAATGCTGTGACATCTAAGTTGCCCTTCTTGGTTACCACTGCAGATGATGCGAAAGATACTGTTAAGGAGGAGATCCGTTTGAGATACCGATGCCTTGACCTACGCCGGCAGCAAATGAATTCCAACATTATGCTAAGACATAGAGTGGTGAAACTCATTCGAAGATACCTAGAAGATATACATGGTTTTGTGGAGATTGAGACTCCAATACTCTCTAGATCTACTCCAGAGGGTGCTCGGGATTATTTGGTGCCCTCAAGAGTTCAGCCAGGGACATTCTATGCTTTGCCCCAAAGTCCACAACTGTTTAAGCAAATGCTAATGGTCTCCGGCTTTGATAAATATTATCAAATAGCAAGATGTTTTCGAGATGAAGATCTTAGAGCAGATAGACAGCCTGAGTTCACACAGTTGGATATGGAATTGGCTTTCACTCCTTTGGAGGATATGCTGAGGCTCAATGAAGATTTGATAAGACAGGTTTTTCTAGAGATTAAGGGCATCCAACTACCCAACCCTTTCCCAAGGCTCACATATGCTGAAGCAATGAGTCGATATGGTTCTGATAGGCCAGATCTTCGTTTCGATCTTGAGTTGAGAGAGGTGTCTGATGTTTTCTCAGAGACTACCTTCAAGGTGTTTGCAGATACTTTGGCAAGTGGGGGAATTATCAAAGTCTTATGTGTGCCTTCGGGCGCAAAACATTATTCAAACACGGCTCTTAAAAAGGGTGATATTTACAGTGAAGCAATCAAATCTGGAGCAAAGGGTTTGCCCTTCCTGAAGGTCTTGGATGATGGGGAAGTAGAAGGAATTCCTGCACTGGTATCAAGTTTGGATCCAACAAATAAAAAGCGGTTACTAAAACAATGCTCTGCAGGATCAGGTGATCTCATATTATTTGCAGTGGGTGACCATGCTTCAGTTAATAAAACTCTAGACAGACTTAGGGTATTTATAGCCCACGAACTGGGTTTGGTTGATCATTCCAGGCATTCAATTCTGTGGGTGACCGATTTTCCAATGTTTGAGTGGAACAGTGCAGAGCAGAGGCTTGAGGCCTTGCATCACCCTTTCACTGCCCCAAATCCTGAAGATATGGAAGATCTTTCCTCAGCCCGTGCCTTAGCTTATGACATGGTTTACAATGGTGTTGAGATTGGTGGAGGAAGTTTGAGAATTTTTAAGCGCGAAGTCCAAGAAAAGGTTTTGGAAATTGTTGGAATCTCACCTGAACAGGCTGAGGCAAAGTTTGGCTACCTTCTAGAGGCTCTGGACATGGGTGCTCCTCCACATGGGGGGATAGCTTATGGACTGGATAGGTTGGTGATGCTATTGGCAGGTGCTAATTCCATCAGGGATGTTATAGCCTTCCCAAAAACCACAACTGCTCAGTGTGCCCTGACTAGGACACCCTCAGAGGTGGATCCTCAGCAACTAAAAGATCTTTCATATCAGACCCAATAG 1974 45.04 MSLFLRAFPLIALRSKPFPLCRTIFKLNPKLLPNRTISYASASFSTETQISDPKPSIILKDTLQWVSRTGFCGELSVDDVGKRVRICGWVALHRVHGGLTFLNLRDHTGIVQVTTLPDEFPKAHSTVNELRLEYVIAVEGIVRSRPSESINKKMRTGLIEVAVEHVQVLNAVTSKLPFLVTTADDAKDTVKEEIRLRYRCLDLRRQQMNSNIMLRHRVVKLIRRYLEDIHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLEDMLRLNEDLIRQVFLEIKGIQLPNPFPRLTYAEAMSRYGSDRPDLRFDLELREVSDVFSETTFKVFADTLASGGIIKVLCVPSGAKHYSNTALKKGDIYSEAIKSGAKGLPFLKVLDDGEVEGIPALVSSLDPTNKKRLLKQCSAGSGDLILFAVGDHASVNKTLDRLRVFIAHELGLVDHSRHSILWVTDFPMFEWNSAEQRLEALHHPFTAPNPEDMEDLSSARALAYDMVYNGVEIGGGSLRIFKREVQEKVLEIVGISPEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGANSIRDVIAFPKTTTAQCALTRTPSEVDPQQLKDLSYQTQ* 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8660791 8679474 + Vvi3g777 Vvi3g777 784452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g777 657 Pfam GAD domain 383 482 IPR029351 -
Vvi3g777 657 Pfam tRNA synthetases class II (D, K and N) 192 631 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi3g777 657 Hamap Aspartate--tRNA(Asp/Asn) ligase [aspS]. 67 657 IPR004524 GO:0005524|GO:0016874
Vvi3g777 657 CDD AspRS_core 212 631 - -
Vvi3g777 657 CDD EcAspRS_like_N 68 208 - -
Vvi3g777 657 Pfam OB-fold nucleic acid binding domain 84 168 IPR004365 GO:0003676
Vvi3g777 657 SUPERFAMILY Class II aaRS and biotin synthetases 192 630 IPR045864 -
Vvi3g777 657 PRINTS Aspartyl-tRNA synthetase signature 265 277 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi3g777 657 PRINTS Aspartyl-tRNA synthetase signature 282 295 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi3g777 657 PRINTS Aspartyl-tRNA synthetase signature 547 563 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi3g777 657 PRINTS Aspartyl-tRNA synthetase signature 591 605 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi3g777 657 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 45 655 - -
Vvi3g777 657 SUPERFAMILY GAD domain-like 364 496 IPR004115 GO:0004812|GO:0005524|GO:0005737
Vvi3g777 657 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 45 655 IPR004524 GO:0005524|GO:0016874
Vvi3g777 657 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 214 628 IPR006195 -
Vvi3g777 657 SUPERFAMILY Nucleic acid-binding proteins 68 170 IPR012340 -
Vvi3g777 657 Gene3D - 60 172 IPR012340 -
Vvi3g777 657 TIGRFAM aspS_bact: aspartate--tRNA ligase 67 655 IPR004524 GO:0005524|GO:0016874
Vvi3g777 657 Gene3D - 347 496 IPR004115 GO:0004812|GO:0005524|GO:0005737
Vvi3g777 657 Gene3D Bira Bifunctional Protein; Domain 2 186 652 IPR045864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g777 K01876 DARS2, aspS; aspartyl-tRNA synthetase [EC:6.1.1.12] - vvi:100241273 1301.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g777 . Blo03g00057 Bda06g01152 . Bpe07g00295 . . Bma12g00306 . . . . . . . . . . . . . . . . Cla10g00957 Cam10g0980 Cec10g1011 Cco10g0974 Clacu10g1002 Cmu10g1784 Cre10g1158 . . Cone3ag1050 Cone10ag1066 . . . . . . . . . . . . Sed07g1150 Cmo04g00458 Cmo16g00319 . . . . Cpe14g00249 Cpe01g00384 Bhi11g01096 Tan01g0600 Cmetu07g2217 . . Mch10g0404 . . . . . . . . Lsi03g01002 . . Cme07g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009118 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34