Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g778 ATGGCTCCAACGAGGAAAAGTAAGGGTCGCCAAAAGGTTGAGATGACTAAAATGACAAAAGAAAGTAACTTACAAGTTACTTTCTCCAAACGCCGATCTGGCCTTTTTAAGAAGGCCAGTGAATTATGCACACTTTGTGGTGCTGAAATTGCTATAATAGTCTTCTCTCCTGGGAAAAAGATGTATTCCTTCGGCCATCCTGGTGTTGAATCAATTATAGATCGGTTTCTTACCGGGAACCCTTTACCCCACTCTGGTGCACTGCAGCTCTTTGAGGCTCATCGTAGTGCAAATGTTCGTGACCTTAATATGCAACTCACTCAAGTTCTCAACCAACTAGAGGGTGAGAAGAAGCGCGGAGAAGCACTTACACAGATGAAGAAGGCCAGCCAAGCACAATATTGGTGGGCAGCTCCGATTGAGGAGCTTAGCTTCGAACAACTCGAGCTTCTGAAGGTGTCGCTAGAAAATCTTAAAAGGAATGTTGAAATGCATGCAGACAAGCATATGATGGAGGCATCGAATCCTCTGACTTTTTTTCTTTCGAGTTCTGTTGGAGCAGGTGTGCCTTATGATGCGCACATTGCTGCATTTGATCCTCTTAACTTTAACTTTGGTTATGGGGGTATAATTAGCTTAAGTAAGCAATTTGAAAATCAAAATTATAGAACATAA 675 42.37 MAPTRKSKGRQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKMYSFGHPGVESIIDRFLTGNPLPHSGALQLFEAHRSANVRDLNMQLTQVLNQLEGEKKRGEALTQMKKASQAQYWWAAPIEELSFEQLELLKVSLENLKRNVEMHADKHMMEASNPLTFFLSSSVGAGVPYDAHIAAFDPLNFNFGYGGIISLSKQFENQNYRT* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8696025 8697570 + Vvi3g778 Vvi3g778 784453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g778 224 Gene3D - 86 176 - -
Vvi3g778 224 PANTHER MADS BOX PROTEIN 7 177 - -
Vvi3g778 224 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Vvi3g778 224 Coils Coil 148 168 - -
Vvi3g778 224 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vvi3g778 224 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vvi3g778 224 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vvi3g778 224 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vvi3g778 224 Gene3D - 21 85 IPR036879 GO:0003677|GO:0046983
Vvi3g778 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vvi3g778 224 CDD MADS_MEF2_like 9 80 IPR033896 GO:0000977|GO:0045944
Vvi3g778 224 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 177 - -
Vvi3g778 224 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vvi3g778 224 Coils Coil 99 119 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14681 PF00319 SRF-TF 1.90E-24 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g778 - - vvi:100251544 419.468