Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g779 ATGGCTACAGTGAGGAAAAGCAAGGGTCGCCAAAGGGTGGAGATGGCCAAAATGACTAAAGAAAGTAATTTACAGGTTACTTTCTCCAAACGCCGATCCGGCCTTTTCAAGAAGGCTAGTGAATTATGCACACTTTGCGGTGTTGAAATCGCCATAGTAGTCTTCTCTCCTGGAAAAAAGGTGTATTCCTTTGGCCATCCTTGCGTGGAATCCATCATAGATAGATTCCTCACTAGAAACCCTTTGCCCAACTCTAGTGCACTGCAACTCTTTGAGGCTCACCGCAGTGCAAATGTTCGGGACCTTAACCTGCAACTTACTCAAGTGCTCAACCAACTAGAGATCGAGAAGAAGCGTGGCGAAGCGCTTACACAGATGAGGAAGGCCAGCCAAGCACAGTGCTGGTGGGCAGCTTCCATTGAGGAGCTCAGCTTTGAGCGGCTGGAGCTTCTGAAGGTGTCGCTGGAAAATCTTAAAAAGAACGTGGCGTTGCAGGTGGACAAGCTTATGATTGAGGCGTCGAATCCTCCAACATTTTTCCCCTCCAATTCTGTGGGAGCAGTTGTGCCTTATGATTCGCAGGTTGCTGGATTTGGCCCTCGTAGCTATGATTTTGGCTATGGGGGTGGTCGTTTGTTTTGA 642 48.44 MATVRKSKGRQRVEMAKMTKESNLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPGKKVYSFGHPCVESIIDRFLTRNPLPNSSALQLFEAHRSANVRDLNLQLTQVLNQLEIEKKRGEALTQMRKASQAQCWWAASIEELSFERLELLKVSLENLKKNVALQVDKLMIEASNPPTFFPSNSVGAVVPYDSQVAGFGPRSYDFGYGGGRLF* 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8744236 8744878 + Vvi3g779 Vvi3g779 784454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g779 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vvi3g779 213 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vvi3g779 213 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 178 - -
Vvi3g779 213 Gene3D - 21 86 IPR036879 GO:0003677|GO:0046983
Vvi3g779 213 PANTHER MADS BOX PROTEIN 7 178 - -
Vvi3g779 213 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vvi3g779 213 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vvi3g779 213 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vvi3g779 213 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Vvi3g779 213 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Vvi3g779 213 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vvi3g779 213 Gene3D - 87 177 - -
Vvi3g779 213 Coils Coil 99 119 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14682 PF00319 SRF-TF 1.90E-24 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g779 - - vvi:100249782 414.075