Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g784 ATGGCTACGGTGAGAAAAAGTAAGGGACGGCAGAAGGTTGAGATGACCAAAATGACGAAAGAAAGCAACCTACAGGTTACCTTCTCCAAACGCCGGTCTGGCCTTTTCAAGAAGGCAAGCGAGTTGTGCACACTTTGTGGTGCAGAAACAGCCATAATAGTCTTCTCTCCTGGCAAAAAGTTGTATTCCTTTGGCCATCCATGCGTCGAATCAATCATAGATCGGTTCCTTATGCGCAACCCTTTGCCCAACTCTGGTGCACTGCAACTCTTTGAGGCTCACCGTACTACAAATGTTCGCAACCTTAATGTGCAGCTCACTCAAGTGGTGAACCAACTAGAGGGTGAGAAAAAGCGAGGTGAAGCACTTACACAGATGTGGAAGGCATGCAAGCCACAGTGCTGGTGGGCAGCTCCAATTGAAGAGTTCAGCTTGGAGCAGCTTGAGCTTCTGAAGGTATCATTGGAAGATCTAAGAAGGAAAGTGGCAAGACAAGCTGATGAACTTATGATAGAGGCAAAAAATCCTCCTGCCTTTTTCCCAGGGAATTCTGTTGGAACGATTATGCCCTATGATGCACAGATGGCTGGATTCGACCCTTATAGTCATAAATATAACTTTGGTTATGGGGGTCCTTTTCTTTGA 645 46.2 MATVRKSKGRQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAETAIIVFSPGKKLYSFGHPCVESIIDRFLMRNPLPNSGALQLFEAHRTTNVRNLNVQLTQVVNQLEGEKKRGEALTQMWKACKPQCWWAAPIEEFSLEQLELLKVSLEDLRRKVARQADELMIEAKNPPAFFPGNSVGTIMPYDAQMAGFDPYSHKYNFGYGGPFL* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8793245 8793890 + Vvi3g784 Vvi3g784 784459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g784 214 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vvi3g784 214 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vvi3g784 214 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vvi3g784 214 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vvi3g784 214 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vvi3g784 214 Gene3D - 87 177 - -
Vvi3g784 214 PANTHER MADS BOX PROTEIN 7 182 - -
Vvi3g784 214 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Vvi3g784 214 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 182 - -
Vvi3g784 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vvi3g784 214 Gene3D - 21 86 IPR036879 GO:0003677|GO:0046983
Vvi3g784 214 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Vvi3g784 214 Coils Coil 99 119 - -
Vvi3g784 214 Coils Coil 145 175 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14684 PF00319 SRF-TF 1.50E-23 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g784 - - vvi:100248056 437.187