Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g784 ATGGCTACGGTGAGAAAAAGTAAGGGACGGCAGAAGGTTGAGATGACCAAAATGACGAAAGAAAGCAACCTACAGGTTACCTTCTCCAAACGCCGGTCTGGCCTTTTCAAGAAGGCAAGCGAGTTGTGCACACTTTGTGGTGCAGAAACAGCCATAATAGTCTTCTCTCCTGGCAAAAAGTTGTATTCCTTTGGCCATCCATGCGTCGAATCAATCATAGATCGGTTCCTTATGCGCAACCCTTTGCCCAACTCTGGTGCACTGCAACTCTTTGAGGCTCACCGTACTACAAATGTTCGCAACCTTAATGTGCAGCTCACTCAAGTGGTGAACCAACTAGAGGGTGAGAAAAAGCGAGGTGAAGCACTTACACAGATGTGGAAGGCATGCAAGCCACAGTGCTGGTGGGCAGCTCCAATTGAAGAGTTCAGCTTGGAGCAGCTTGAGCTTCTGAAGGTATCATTGGAAGATCTAAGAAGGAAAGTGGCAAGACAAGCTGATGAACTTATGATAGAGGCAAAAAATCCTCCTGCCTTTTTCCCAGGGAATTCTGTTGGAACGATTATGCCCTATGATGCACAGATGGCTGGATTCGACCCTTATAGTCATAAATATAACTTTGGTTATGGGGGTCCTTTTCTTTGA 645 46.2 MATVRKSKGRQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAETAIIVFSPGKKLYSFGHPCVESIIDRFLMRNPLPNSGALQLFEAHRTTNVRNLNVQLTQVVNQLEGEKKRGEALTQMWKACKPQCWWAAPIEEFSLEQLELLKVSLEDLRRKVARQADELMIEAKNPPAFFPGNSVGTIMPYDAQMAGFDPYSHKYNFGYGGPFL* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8793245 8793890 + Vvi3g784 Vvi3g784 784459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g784 214 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vvi3g784 214 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vvi3g784 214 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vvi3g784 214 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vvi3g784 214 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vvi3g784 214 Gene3D - 87 177 - -
Vvi3g784 214 PANTHER MADS BOX PROTEIN 7 182 - -
Vvi3g784 214 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Vvi3g784 214 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 182 - -
Vvi3g784 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vvi3g784 214 Gene3D - 21 86 IPR036879 GO:0003677|GO:0046983
Vvi3g784 214 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Vvi3g784 214 Coils Coil 99 119 - -
Vvi3g784 214 Coils Coil 145 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g784 - - - vvi:100248056 437.187
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g784 . . . . . Bpe12g00730 . . . . . . . . . . . . . . . . . . Cla10g00956 Cam10g0979 Cec10g1010 Cco10g0973 Clacu10g1001 Cmu10g1783 Cre10g1157 . . . . . . . . . . . . . . . . Sed14g1573 Cmo04g00457 . . . . . . Cpe01g00383 Bhi11g01095 Tan01g0599 Cmetu07g0995 . Hepe07g0389 Mch10g0403 . . . . . . . . Lsi03g01001 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7g1111 ECH 1 308 Type I MADS-box Gene Family AT1G22130 50.3 6.0e-73 271.6
Vvi18g689 . 1 163 Type I MADS-box Gene Family AT1G22130 50.9 2.6e-39 159.8
Vvi14g25 . 1 149 Type I MADS-box Gene Family AT3G05860 53.6 1.0e-37 154.1
Vvi3g778 . 5 195 Type I MADS-box Gene Family AT5G60440 56.1 5.4e-49 191.8
Vvi3g779 . 4 184 Type I MADS-box Gene Family AT5G60440 57.1 3.5e-48 189.1
Vvi3g784 . 4 184 Type I MADS-box Gene Family AT5G60440 56.0 1.3e-45 180.6
Vvi3g785 . 4 165 Type I MADS-box Gene Family AT5G60440 51.8 2.1e-37 153.3
Vvi18g689 . 1 163 Type I MADS-box Gene Family AT1G77980 50.3 3.7e-38 156.0
Vvi7g1111 ECH 1 174 Type I MADS-box Gene Family AT1G77950 59.9 2.6e-52 202.6
Vvi14g25 . 1 155 Type I MADS-box Gene Family AT5G48670 71.2 2.2e-56 216.5
Vvi14g25 . 1 149 Type I MADS-box Gene Family AT3G05860 53.6 1.0e-37 154.1
Vvi3g778 . 5 195 Type I MADS-box Gene Family AT5G60440 56.1 5.4e-49 191.8
Vvi3g779 . 4 184 Type I MADS-box Gene Family AT5G60440 57.1 3.5e-48 189.1
Vvi3g784 . 4 184 Type I MADS-box Gene Family AT5G60440 56.0 1.3e-45 180.6
Vvi3g785 . 4 165 Type I MADS-box Gene Family AT5G60440 51.8 2.1e-37 153.3
Vvi18g689 . 1 163 Type I MADS-box Gene Family AT1G77980 50.3 3.7e-38 156.0
Vvi7g1111 ECH 1 174 Type I MADS-box Gene Family AT1G77950 59.9 2.6e-52 202.6
Vvi14g25 . 1 155 Type I MADS-box Gene Family AT5G48670 71.2 2.2e-56 216.5
Vvi7g1111 ECH 1 308 Type I MADS-box Gene Family AT1G22130 50.3 6.0e-73 271.6
Vvi18g689 . 1 163 Type I MADS-box Gene Family AT1G22130 50.9 2.6e-39 159.8
Vvi3g778 . 5 195 Type I MADS-box Gene Family AT5G60440 56.1 5.4e-49 191.8
Vvi3g779 . 4 184 Type I MADS-box Gene Family AT5G60440 57.1 3.5e-48 189.1
Vvi3g784 . 4 184 Type I MADS-box Gene Family AT5G60440 56.0 1.3e-45 180.6
Vvi3g785 . 4 165 Type I MADS-box Gene Family AT5G60440 51.8 2.1e-37 153.3
Vvi14g25 . 1 155 Type I MADS-box Gene Family AT5G48670 71.2 2.2e-56 216.5
Vvi7g1111 ECH 1 174 Type I MADS-box Gene Family AT1G77950 59.9 2.6e-52 202.6
Vvi18g689 . 1 163 Type I MADS-box Gene Family AT1G77980 50.3 3.7e-38 156.0
Vvi14g25 . 1 149 Type I MADS-box Gene Family AT3G05860 53.6 1.0e-37 154.1
Vvi7g1111 ECH 1 308 Type I MADS-box Gene Family AT1G22130 50.3 6.0e-73 271.6
Vvi18g689 . 1 163 Type I MADS-box Gene Family AT1G22130 50.9 2.6e-39 159.8
Vvi3g778 . 5 195 Type I MADS-box Gene Family AT5G60440 56.1 5.4e-49 191.8
Vvi3g779 . 4 184 Type I MADS-box Gene Family AT5G60440 57.1 3.5e-48 189.1
Vvi3g784 . 4 184 Type I MADS-box Gene Family AT5G60440 56.0 1.3e-45 180.6
Vvi3g785 . 4 165 Type I MADS-box Gene Family AT5G60440 51.8 2.1e-37 153.3
Vvi14g25 . 1 155 Type I MADS-box Gene Family AT5G48670 71.2 2.2e-56 216.5
Vvi7g1111 ECH 1 174 Type I MADS-box Gene Family AT1G77950 59.9 2.6e-52 202.6
Vvi18g689 . 1 163 Type I MADS-box Gene Family AT1G77980 50.3 3.7e-38 156.0
Vvi14g25 . 1 149 Type I MADS-box Gene Family AT3G05860 53.6 1.0e-37 154.1
Vvi7g1111 ECH 1 308 Type I MADS-box Gene Family AT1G22130 50.3 6.0e-73 271.6
Vvi18g689 . 1 163 Type I MADS-box Gene Family AT1G22130 50.9 2.6e-39 159.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14684 PF00319 SRF-TF 1.50E-23 No_clan Vvi TF