Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g785 ATGGTGGAGAAGTCAAGCAAGGGTCGCCAAAAGATCGAAATTGCGAAAATACCGAAGAAAAATCATCTTCAAGTCACCTTCTCCAAGCGCAAGTCTGGGCTCTTCAAGAAGGCTAGTGAACTTTGCACTCTTTGTGGGGCAAATATTGCTATATTAGTTTTTTCCCCTGGTGGAAAGGTATTCTCTTTTGGTCATCCTGATGTTCGGTACATCGTCTATTCGTTCTTCGCTAACATACCTCCAACCAAACGTAGCGATCTCAACCTAATTGAAGCTCATGATCAGAATGCTAGTATCCACAAGCTCAACTTACAGCTCGCAGAAGTGCTTAACCAACTAGAAGCCGAGAAAAAGAGAGGTGAAATACTTGGCCAAATAAGAGCTAGCCAAGGCCAATGCTGGTGGGAAGCACCAATTGATGAGTTAAGCTTGTTTGAGCTTCAACAATTGAAGGTGTCCATGGAGGAGCTTAAGAAGATTGTAGTGAGTCAAGCTGAACTGCTTCTAATGGAGGGCAATGCTAACCCTTCTACTTTCAATAAGGTTAATGGGTACCCAATGGTTGATGATTTTGAGTTTGAGAGGAAACTCAGTGAGATTCATGGTCTTTCCATTGTGCCCCATGTCCATAATTTTGGTCATGGACTAGGCTTTTTCTGA 660 42.88 MVEKSSKGRQKIEIAKIPKKNHLQVTFSKRKSGLFKKASELCTLCGANIAILVFSPGGKVFSFGHPDVRYIVYSFFANIPPTKRSDLNLIEAHDQNASIHKLNLQLAEVLNQLEAEKKRGEILGQIRASQGQCWWEAPIDELSLFELQQLKVSMEELKKIVVSQAELLLMEGNANPSTFNKVNGYPMVDDFEFERKLSEIHGLSIVPHVHNFGHGLGFF* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8820034 8820694 + Vvi3g785 Vvi3g785 784460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g785 219 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Vvi3g785 219 Gene3D - 86 185 - -
Vvi3g785 219 CDD MADS 8 66 - -
Vvi3g785 219 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Vvi3g785 219 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Vvi3g785 219 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Vvi3g785 219 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Vvi3g785 219 PANTHER MADS BOX PROTEIN 6 177 - -
Vvi3g785 219 SUPERFAMILY SRF-like 8 80 IPR036879 GO:0003677|GO:0046983
Vvi3g785 219 Coils Coil 99 119 - -
Vvi3g785 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Vvi3g785 219 Gene3D - 19 85 IPR036879 GO:0003677|GO:0046983
Vvi3g785 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 6 177 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14685 PF00319 SRF-TF 4.70E-23 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g785 - - vvi:100263465 440.269