Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g786 ATGGATCCCTGCCCTTTCCTTCGGATCCTTGTGGGAAATCTAGCTCTCAAGTCTCCTGCTCTGATCCCCTCCAAGTCTGCCTTCTCGCTTGTTCATCCTTCTTCTTCTCCCTTCTTTTGCAAGATCAAGCTCGGAAATTTCCCCTCGCAGTTCGCTACGGTTCCCTTGGTTCCACAAGAGACTCACACTTCGGATGACGTCGTTTCCTTCACTTTGACTCGGAAGGATATCGAAAAGCTGGGGGAGAAGAGCCTTTTCTCCACTAAGGAGCCGCGTTTACAGATTCTGGTTTACACTGGGCGGAGAGGGAGGAGTTGTGGGTTCAGCGCTGGGAAGCTGTTGGGTAGAGTCACGGTGGGGTTGGATCTCAAGGGGGCGGTGGGTAGAGCTTGTGTATTTCACAATGGATGGGTCTCCGTCGGCGGCGAGTCCTCTCAGTTGTATTTGAGCGTTCGGGCCGAGCCTGATCCGAGATTTGTGTTTCAGTTTGGGGGGGAACCGGAGTGCAGCCCTCAGGTTTTTCAGATTCAGGGAAACCTCCGGCAGCCGGTGTTTACCTGCAAGTTCAGTTTCAGAAACTCCGGTGACCGAAGCTTGAGATCAAGATCATCGATTTCAGAAGCGAGCACATCGAGAAGCTGGTTCAGTTCTAAAGATGAGGATTCAAAGGAGCGCAAAGGGTGGTCGATAACCATCCACGATCTCTCGGGCTGTCCTGTCGCCGCTGCTTCGATGACGAATCCCTTCGTCCCCTCGCCGGGCTCCGGCCGGGTCAAGCGGTCGAACCCTGGAGCCTGGCTGATCCTCCGGCCGGAAGACGGGACCTGGAAGCCGTGGGGGAGGCTAGAGGCATGGCGGGAGCCGGACGGCCTAGGCCACCGCTTCGAGCTCCTCCCGGACGCAACGGGCGGCCCCGCCGTTCTTCTCGCCAGTTCTACTCTCAGCACCAAAAAAGGCGGGAAATTCACCATTGACTCCAGCTCCAGGAACTTTCCGGCGACGACCCCGAGAGGCGCGTGCGAGTCCGGAACAAGGTCATGGGTGGAATCGGTATACAGAGGGTTCGTGATGTCATCGACGGTGGGCGGAGAGGGGCGGTGCAGCACGCCGGAGGTGGAGGTGGGGGTGAAGCACGTGACGTGCACGGAGGACGCGGCGGCGTTCGTGGCGTTGGCGGCGGCCATGGACCTGAGCATGGACGCCTGCAAGCTGTTTTCACAGAAACTGAGGAAAGAGCTGAGAAGGCAGCAGAGCAGTTTACATTGTGATGTTGCATAA 1278 57.51 MDPCPFLRILVGNLALKSPALIPSKSAFSLVHPSSSPFFCKIKLGNFPSQFATVPLVPQETHTSDDVVSFTLTRKDIEKLGEKSLFSTKEPRLQILVYTGRRGRSCGFSAGKLLGRVTVGLDLKGAVGRACVFHNGWVSVGGESSQLYLSVRAEPDPRFVFQFGGEPECSPQVFQIQGNLRQPVFTCKFSFRNSGDRSLRSRSSISEASTSRSWFSSKDEDSKERKGWSITIHDLSGCPVAAASMTNPFVPSPGSGRVKRSNPGAWLILRPEDGTWKPWGRLEAWREPDGLGHRFELLPDATGGPAVLLASSTLSTKKGGKFTIDSSSRNFPATTPRGACESGTRSWVESVYRGFVMSSTVGGEGRCSTPEVEVGVKHVTCTEDAAAFVALAAAMDLSMDACKLFSQKLRKELRRQQSSLHCDVA* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8825458 8827504 + Vvi3g786 Vvi3g786 784461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g786 425 Pfam Protein of unknown function (DUF1005) 1 414 IPR010410 -
Vvi3g786 425 PANTHER OS08G0163500 PROTEIN 1 417 IPR010410 -
Vvi3g786 425 PANTHER OS07G0133500 PROTEIN 1 417 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g786 - - - vvi:100254836 813.913
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g786 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00953 Cam10g0978 Cec10g1008 Cco10g0972 Clacu10g1000 Cmu10g1782 Cre10g1156 . . . . . . . . . . . . . . . . Sed07g1152 Cmo04g00456 Cmo16g00318 . . . . Cpe14g00248 Cpe01g00382 Bhi11g01094 Tan01g0598 Cmetu07g1054 . . Mch10g0402 . . . . . . . . Lsi03g01000 . . Cme07g02217
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004559 2 1 1 2 2 0 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 41