Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g787 ATGTTTAAGTCGCCTAGCAGAAACCAGAGATCCAAAGGTTTCAAGGTAAAGCATATTCTGCAGATTTGCCTGTTACTTGCTGTTTGCTTCTGGTTGATCTACCAAGTGAAGCACTCCCATGATAAGAAGAAAGAGTTTGATGCAAATGATGCAAAAATCTCATCAAACACGCAAGGTGGCAATGAACTTCTGAAATTTGGAAGGAAGGATCTCCATCCTCGGGTGGATGGAGAAGCAAAGAATGAAAAACATGGGGAAGAAGAAACTGAAGAAGAGGATGAAGCTGGAGGAGTAGAGGAAGAAGAAAGCAAGCATGATGAAGAAGCAAGAAGAAGAAGAAAGCAAGGTTGA 351 41.6 MFKSPSRNQRSKGFKVKHILQICLLLAVCFWLIYQVKHSHDKKKEFDANDAKISSNTQGGNELLKFGRKDLHPRVDGEAKNEKHGEEETEEEDEAGGVEEEESKHDEEARRRRKQG* 117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8828256 8831730 - Vvi3g787 Vvi3g787 784462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g787 116 MobiDBLite consensus disorder prediction 65 86 - -
Vvi3g787 116 MobiDBLite consensus disorder prediction 102 116 - -
Vvi3g787 116 PANTHER MYB-LIKE PROTEIN X 1 113 - -
Vvi3g787 116 MobiDBLite consensus disorder prediction 43 116 - -
Vvi3g787 116 PANTHER MYB-LIKE PROTEIN X 1 113 - -
Vvi3g787 116 MobiDBLite consensus disorder prediction 87 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g787 - - - vvi:100259947 185.267
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g787 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1052 Cone10ag1070 . . . . . . . . . . . . Sed07g1153 . Cmo16g00317 . . . . Cpe14g00247 Cpe01g00381 Bhi11g01093 Tan01g0597 Cmetu07g1866 . Hepe07g0387 Mch10g0400 . . . . . . . . . . . Cme07g02218
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001422 2 2 3 1 1 2 4 2 2 3 2 2 4 1 0 3 2 4 4 2 1 2 2 2 2 2 2 5 3 1 68