Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g790 | ATGGGGTTGTGTAAGATTTCATTGCCACTTCTTGTTGGTCTCATGGGATTAGCCCTAGCTCACGTCTGTTGTGCCCAGAACTCTCCACAGGACTACGTCAATGCTCACAATGCAGCACGGGCACAAGTTGGCGTTGGGTCTATGACATGGAACGACACTGTAGCTGCCTACGCCCAGAACTATGCTAACAAGAGGATTAGCGACTGCAATCTAGTGCACTCAGGTGGGCCTTATGGTGAGAACCTGGCCAAGGGCAGTGGTTCATTGACAGGCACCGATGCGTGCCTGCACTATACTCAGGTTGTTTGGAGCAACTCAGTTCGCCTTGGGTGCGCCAGGGTTCAGTGCAACAATGGGTGGTGGTTCGTCACATGCAACTACGATCCACCGGGCAACTATATTTCAATGGCGCTCCTTGTTGGTCTCATGGGGTTAGCCCTAGCTCACACCTGCTGTGCCCAGAACTCTCCACAGGACTACGTCGATGCTCACAATGCAGCGCGGGCCCAAGTTGGCGTTGGGTCTATAACATGGAACGACACTGTAGCTGCCTACGCCCAGAACTATGCTAACCAGAGGATTAGCGACTGCAATCTAGTGCACTCAGGTGGGCCTTACGGTGAGAACCTGGCCAAAGGCAGCGGTTCATTGACAGGCACCGATGCGTGTGGGCACTATACTCAGGTTGTGTGGCGCAACTCGGTGCGTCTTGGGTGCGCTAGGGTTCAGTGCAACAATGGGTGGTGGTTCGTCACATGCAACTACGATCCACCGGGCAACTATGTGGGACAGCGGCCTTATTAA | 804 | 53.98 | MGLCKISLPLLVGLMGLALAHVCCAQNSPQDYVNAHNAARAQVGVGSMTWNDTVAAYAQNYANKRISDCNLVHSGGPYGENLAKGSGSLTGTDACLHYTQVVWSNSVRLGCARVQCNNGWWFVTCNYDPPGNYISMALLVGLMGLALAHTCCAQNSPQDYVDAHNAARAQVGVGSITWNDTVAAYAQNYANQRISDCNLVHSGGPYGENLAKGSGSLTGTDACGHYTQVVWRNSVRLGCARVQCNNGWWFVTCNYDPPGNYVGQRPY* | 268 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 8895285 | 8912074 | - | Vvi3g790 | Vvi3g790 | 784465 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g790 | 267 | Pfam | Cysteine-rich secretory protein family | 216 | 255 | IPR014044 | - | |
| Vvi3g790 | 267 | Pfam | Cysteine-rich secretory protein family | 88 | 127 | IPR014044 | - | |
| Vvi3g790 | 267 | Pfam | Cysteine-rich secretory protein family | 161 | 212 | IPR014044 | - | |
| Vvi3g790 | 267 | Pfam | Cysteine-rich secretory protein family | 33 | 86 | IPR014044 | - | |
| Vvi3g790 | 267 | ProSitePatterns | CRISP family signature 2. | 250 | 261 | IPR018244 | GO:0005576 | |
| Vvi3g790 | 267 | SMART | SCP_3 | 155 | 263 | IPR014044 | - | |
| Vvi3g790 | 267 | SMART | SCP_3 | 27 | 135 | IPR014044 | - | |
| Vvi3g790 | 267 | Gene3D | CAP | 220 | 267 | IPR035940 | - | |
| Vvi3g790 | 267 | Gene3D | CAP | 93 | 137 | IPR035940 | - | |
| Vvi3g790 | 267 | Gene3D | CAP | 26 | 92 | IPR035940 | - | |
| Vvi3g790 | 267 | PANTHER | CYSTEINE-RICH SECRETORY PROTEIN-RELATED | 93 | 135 | IPR001283 | - | |
| Vvi3g790 | 267 | PANTHER | CYSTEINE-RICH SECRETORY PROTEIN-RELATED | 220 | 267 | IPR001283 | - | |
| Vvi3g790 | 267 | PANTHER | CYSTEINE-RICH SECRETORY PROTEIN-RELATED | 17 | 86 | IPR001283 | - | |
| Vvi3g790 | 267 | PANTHER | CYSTEINE-RICH SECRETORY PROTEIN-RELATED | 144 | 214 | IPR001283 | - | |
| Vvi3g790 | 267 | PANTHER | BASIC FORM OF PATHOGENESIS-RELATED PROTEIN 1 | 93 | 135 | - | - | |
| Vvi3g790 | 267 | PANTHER | BASIC FORM OF PATHOGENESIS-RELATED PROTEIN 1 | 220 | 267 | - | - | |
| Vvi3g790 | 267 | PANTHER | BASIC FORM OF PATHOGENESIS-RELATED PROTEIN 1 | 17 | 86 | - | - | |
| Vvi3g790 | 267 | PANTHER | BASIC FORM OF PATHOGENESIS-RELATED PROTEIN 1 | 144 | 214 | - | - | |
| Vvi3g790 | 267 | SUPERFAMILY | PR-1-like | 27 | 136 | IPR035940 | - | |
| Vvi3g790 | 267 | Gene3D | CAP | 150 | 219 | IPR035940 | - | |
| Vvi3g790 | 267 | ProSitePatterns | CRISP family signature 2. | 122 | 133 | IPR018244 | GO:0005576 | |
| Vvi3g790 | 267 | PRINTS | Allergen V5/Tpx-1 family signature | 176 | 194 | IPR001283 | - | |
| Vvi3g790 | 267 | PRINTS | Allergen V5/Tpx-1 family signature | 223 | 239 | IPR001283 | - | |
| Vvi3g790 | 267 | PRINTS | Allergen V5/Tpx-1 family signature | 250 | 263 | IPR001283 | - | |
| Vvi3g790 | 267 | CDD | CAP_PR-1 | 29 | 134 | - | - | |
| Vvi3g790 | 267 | SUPERFAMILY | PR-1-like | 155 | 267 | IPR035940 | - | |
| Vvi3g790 | 267 | ProSitePatterns | CRISP family signature 1. | 224 | 234 | IPR018244 | GO:0005576 | |
| Vvi3g790 | 267 | CDD | CAP_PR-1 | 157 | 267 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g790 | K13449 | PR1; pathogenesis-related protein 1 | - | zju:107413742 | 317.005 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g790 | . | Blo03g00054 | Bda06g01150 | . | . | . | Bma05g00637 | . | Cmo19g00544 | Cmo11g01430 | . | . | . | . | Sed10g1935 | . | . | Bhi05g01000 | Tan02g1067 | Cmetu01g2331 | Lac12g0135 | . | . | . | Cla02g00703 | Cam02g0736 | Cec02g0750 | Cco02g0776 | Clacu02g0746 | Cmu02g0741 | Cre02g1054 | . | . | . | . | Lsi03g00608 | Csa07g00665 | . | Cme01g00137 | . | . | . | . | . | . | . | . | . | . | . | . | Cma19g00535 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Chy01g00149 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0020632 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 4 |