Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g791 ATGAAATTACTTATAAAAAAAAGGGTGACTAAGGGACCTTTGAATGATAAGAACATTGTAACTGAAATTCTTCCAGCAAAGAGGTTTTACAGAACAGAGGAGTACCATCAGCAATATTTGGAAAATGGTGGAGGTAAAGGCTTATGCCAGTTTGCTGAAAAGGGTTGCACTGACCCCATCAGATGCTATGACATCACTGGCCCTTCTATGCCTCCTTGGCTTAGCCCTAGCGCATCTCTCCCATGCCCAAAACACCCCACAAGACTACCTTACCGCCCACAACGCCGCGCGGGCAGAGCTCACACCTGCTATGCCCAGAACTCTCCACAGGACTACGTCAATGCTCACAATACAGCGCGGGCACAAGTTGGTGTTGGGTCTATGACATGGGACGACACTGTGGCTACCTACGCCCAGAACTATGCTAACCAGAGGATTGGCGACTGCAATCTAGTGCATTCAGGTGGGCCTTACGCAACTCAGTGCGTCTTGGGTGCGCTAGGGTTCAATGCAACAGTGGAGGGTGGTTCGTCACATGCAACTACGATCCACCGGGCAACTATCAGGGACAACATCCTTATTAAACTTCTTGGAACTACCTCTAAGCAAAGTACTACATTTATATCAAGTAGTGGGACATGGCCAACTTTGACACGTCATTGGGGGATATCATTGCAGGAACAAGTAGTGGGTGGACTAATGCGCCTAAATCTGGTTCAGTGGATGGTCACCCAAATGAAAGGCTTGGTTGAGTTTCCCTCAATCCTCCTAGACTCGATGTACTTGAGACACCAAAATGCATATGGGAAGAGATATTTTTCCTTATGGAAGGGATATCTCCCATCCAAGGCACGTGGAAGTCATGCCTAA 870 47.7 MKLLIKKRVTKGPLNDKNIVTEILPAKRFYRTEEYHQQYLENGGGKGLCQFAEKGCTDPIRCYDITGPSMPPWLSPSASLPCPKHPTRLPYRPQRRAGRAHTCYAQNSPQDYVNAHNTARAQVGVGSMTWDDTVATYAQNYANQRIGDCNLVHSGGPYATQCVLGALGFNATVEGGSSHATTIHRATIRDNILIKLLGTTSKQSTTFISSSGTWPTLTRHWGISLQEQVVGGLMRLNLVQWMVTQMKGLVEFPSILLDSMYLRHQNAYGKRYFSLWKGYLPSKARGSHA* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8915654 8927983 - Vvi3g791 Vvi3g791 784466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g791 289 Pfam Peptide methionine sulfoxide reductase 8 45 IPR002569 GO:0008113
Vvi3g791 289 SUPERFAMILY Peptide methionine sulfoxide reductase 7 55 IPR036509 GO:0008113
Vvi3g791 289 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 97 159 IPR001283 -
Vvi3g791 289 SMART SCP_3 107 235 IPR014044 -
Vvi3g791 289 Pfam Cysteine-rich secretory protein family 113 145 IPR014044 -
Vvi3g791 289 PANTHER BASIC FORM OF PATHOGENESIS-RELATED PROTEIN 1 97 159 - -
Vvi3g791 289 SUPERFAMILY PR-1-like 107 161 IPR035940 -
Vvi3g791 289 Gene3D CAP 106 214 IPR035940 -
Vvi3g791 289 Gene3D Peptide methionine sulphoxide reductase MsrA 3 64 IPR036509 GO:0008113
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g791 K13449 PR1; pathogenesis-related protein 1 - vvi:100247990 133.265
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g791 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071802 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1