Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g792 ATGGGGTTGTGTAAGATCTCATCTTCACTAGTTGTTGGTTTCATGGGGTTAGTCCTTGCTCACATCTCCTATGCCCAAAACTCTCCACAAGACTTCCTCGATGCTCACAATGTCGCGCGTGCAGAAGTTGGTGTTGGGCCTATGTCATGGGACAACACTGTGGCTGCCTACGCCCAAAATTATACTAACCAGAGGATTGGCGATTGCAATCTAGTGCATTCAGGTGGGCCTTACGGTGAGAACCTTGCCTGGGGCTCCCCTTCATTGACAGGCATCGATGCAGTGAACTTGCACTATACTCAAGTTATTTGGCGCAACTCATTGCGTCTTGGGTGCGCTAGGGCTCAGTGCAACAGTGGCGGGTGGTTTGTCACTTGCAACTATGATCCTCCAGGCAACTACGTTGGACAACGTCCTTTTACGGAGAACTCTAACAGCAGTCATAGTTGTATAGTTGCTATTTACTGA 468 48.93 MGLCKISSSLVVGFMGLVLAHISYAQNSPQDFLDAHNVARAEVGVGPMSWDNTVAAYAQNYTNQRIGDCNLVHSGGPYGENLAWGSPSLTGIDAVNLHYTQVIWRNSLRLGCARAQCNSGGWFVTCNYDPPGNYVGQRPFTENSNSSHSCIVAIY* 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8949484 8950329 - Vvi3g792 Vvi3g792 784467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g792 155 Pfam Cysteine-rich secretory protein family 33 128 IPR014044 -
Vvi3g792 155 PANTHER BASIC FORM OF PATHOGENESIS-RELATED PROTEIN 1 9 95 - -
Vvi3g792 155 PANTHER BASIC FORM OF PATHOGENESIS-RELATED PROTEIN 1 98 146 - -
Vvi3g792 155 SUPERFAMILY PR-1-like 26 144 IPR035940 -
Vvi3g792 155 CDD CAP_PR-1 29 140 - -
Vvi3g792 155 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Vvi3g792 155 PRINTS Allergen V5/Tpx-1 family signature 96 112 IPR001283 -
Vvi3g792 155 PRINTS Allergen V5/Tpx-1 family signature 123 136 IPR001283 -
Vvi3g792 155 ProSitePatterns CRISP family signature 2. 123 134 IPR018244 GO:0005576
Vvi3g792 155 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 98 146 IPR001283 -
Vvi3g792 155 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 9 95 IPR001283 -
Vvi3g792 155 SMART SCP_3 27 136 IPR014044 -
Vvi3g792 155 Gene3D CAP 97 147 IPR035940 -
Vvi3g792 155 Gene3D CAP 22 96 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g792 K13449 PR1; pathogenesis-related protein 1 - vvi:100253281 319.316
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g792 . Blo03g00053 Bda06g01149 . Bpe07g00298 . Bma05g00636 Bma12g00310 Cmo19g00543 . . . . . . Cpe04g00336 Cpe15g00425 . . . . . . . Cla02g00705 Cam02g0738 Cec02g0752 Cco02g0778 Clacu02g0748 Cmu02g0742 Cre02g1056 . . . . Lsi03g00618 Csa07g00664 . Cme01g00139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00150 Cme07g02221
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127