Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g798 ATGGATTATAGTTGGGGTCGAGCCATCTATGGTGAGCAGTTGTATCTCTGGGATCCTAACTCCAGAAATCTAACTGATTTAACTACCAACTTCTCCTTTGTCATTGATTCACTTAACAGCAGTTCATATGCTGATGGCCTCACCTTCTTCCTTAACGACACCCAATTGCCTTCACGTGTGTGGGGAGAAAACATCGGTCTCACGGAGTTTAACGTGACAAATACAACTGCAATTCATTTTGTCGTAGTGGACAATATAAAGGAAGGAAAGCTAAATCATGTTTCCATCTGTTATACTTCTAGTTCACAAAATCTGAGTGTTGTTCTAATCACTGAGTTTATGGGCGATCGAACTACCTCCCAAAGCCTCTACTACAAAGTTGATCTGAGAGAATACTTGCCAGAATTCGTTAATATTGGCTTCTCAGGAGCAACAGGAAGAGCATTCCAGAAAAACAACATTCACTCATGGAATTTCAGTTCAACTTTGCAACCTCCTAGTCCTGTAGAACCAGGAGATGGAAAGAATGGAAAGAAAACAGGATTTGTGGTGGGATTGAGTGTTTATGATACTGACTCTGACCCAACCATGGACGAAGACTTTGAAAAGGGTATTGGACTTGGGAAATTTTCCTTCCAAGAATTGGCTCTTGCAACCAGTAACTTTGCAGAGGAGGAAAAGCTTGGAGAGGGAGGGTTCGGTGGGGTCTATAGAGGCTTCTTAAGGAAACTGAACTCTTACGTTGTAATTAAGAGAGAGTATGCATTTGAAGTGAAGATCATCAGTCCATTGAGGCATCAGAACTTGGTGCAGCTCATGGGCTGGTGCCATAACAAAAGAGAGCTCGTATTGGTTTGTGAGCTCATTCCAAATGGCAACTTAAGCTCCTGTCTTTTGGAAGAAAAAACCCTGCTAACATGGGCAATGAGGTATAAAATTGCTCTTGGCTTGGCCTCTTCGTTGCTCTACCTACATGAAGAATGGGAACAATGTGTGGCACATAGGGATATCAAATCGAGTAATGTGATGTTGGACTCAGATTTCAATGCCAAGCTTGGAGATTTTGGACTAGCCAGGCTTGTTGATCATGGGAAAGGGTCACAAACCACAGTTTTAGCTGGAACATGGGATACATGGCTCCTGAATGTCTCATGA 1155 42.51 MDYSWGRAIYGEQLYLWDPNSRNLTDLTTNFSFVIDSLNSSSYADGLTFFLNDTQLPSRVWGENIGLTEFNVTNTTAIHFVVVDNIKEGKLNHVSICYTSSSQNLSVVLITEFMGDRTTSQSLYYKVDLREYLPEFVNIGFSGATGRAFQKNNIHSWNFSSTLQPPSPVEPGDGKNGKKTGFVVGLSVYDTDSDPTMDEDFEKGIGLGKFSFQELALATSNFAEEEKLGEGGFGGVYRGFLRKLNSYVVIKREYAFEVKIISPLRHQNLVQLMGWCHNKRELVLVCELIPNGNLSSCLLEEKTLLTWAMRYKIALGLASSLLYLHEEWEQCVAHRDIKSSNVMLDSDFNAKLGDFGLARLVDHGKGSQTTVLAGTWDTWLLNVS* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9080158 9083772 + Vvi3g798 Vvi3g798 784473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g798 384 Gene3D - 84 163 - -
Vvi3g798 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 332 344 IPR008271 GO:0004672|GO:0006468
Vvi3g798 384 SUPERFAMILY Protein kinase-like (PK-like) 208 375 IPR011009 -
Vvi3g798 384 Gene3D - 1 83 - -
Vvi3g798 384 PANTHER RECEPTOR LECTIN KINASE 85 180 - -
Vvi3g798 384 PANTHER RECEPTOR LECTIN KINASE 190 375 - -
Vvi3g798 384 PANTHER RECEPTOR LECTIN KINASE 4 84 - -
Vvi3g798 384 ProSitePatterns Legume lectins alpha-chain signature. 133 142 IPR000985 -
Vvi3g798 384 Pfam Protein kinase domain 223 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g798 384 Gene3D Transferase(Phosphotransferase) domain 1 289 379 - -
Vvi3g798 384 Gene3D Phosphorylase Kinase; domain 1 207 288 - -
Vvi3g798 384 SMART serkin_6 222 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g798 384 PANTHER - 85 180 - -
Vvi3g798 384 PANTHER - 190 375 - -
Vvi3g798 384 PANTHER - 4 84 - -
Vvi3g798 384 ProSiteProfiles Protein kinase domain profile. 222 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g798 384 SUPERFAMILY Concanavalin A-like lectins/glucanases 3 163 IPR013320 -
Vvi3g798 384 ProSitePatterns Protein kinases ATP-binding region signature. 228 251 IPR017441 GO:0005524
Vvi3g798 384 Pfam Legume lectin domain 85 167 IPR001220 GO:0030246
Vvi3g798 384 Pfam Legume lectin domain 3 83 IPR001220 GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g798 - - - vvi:100244573 564.688
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00272 . . . . . . . . . . . . . . . . . . . . Bhi10g01655 . . . . . . Cla09g01671 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76578 PF00069 Pkinase 4.90E-27 CL0016 Vvi PK