Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g799 ATGGGGCTGTGCAAGAGAGAATTAGCCCTCATCTGCTTCATTGGAATATTAGCCCTAGTCCATCCCTCCCATGCCCAAAACTCCCAACAAGACTACCTCGATGTCCACAACGCAGCTCGGGCGGACGTTGGCGTTGAGCCCATGACATGGGATGACAATGTGGCGGCCTATGCGAGGGACTATGCTAGCCAAAGGAGTGGCGACTGCAACATGGTGCATTCAAATGGTCCTTATGGCGAGAACCTCGCCATGGGCAGTGGTGATTTCACCGCCACGGATGCTGCCAACCTGTGGGTTGGAGAGAAGTCTAATTATGACTATAACTCTAACTCATGTGTTGGAGGAGAGTGTGGACATTATACTCAGGTGGTTTGGCGCAATTCGGTAAGTCTAGGGTGTGCAAGAGTGCAGTGCAACAATGGCTGGTGGTTCGTCAGCTGCAACTACAGCCCACAGGGCAACATCATCGGCCAGCACCCTTACTAG 486 52.67 MGLCKRELALICFIGILALVHPSHAQNSQQDYLDVHNAARADVGVEPMTWDDNVAAYARDYASQRSGDCNMVHSNGPYGENLAMGSGDFTATDAANLWVGEKSNYDYNSNSCVGGECGHYTQVVWRNSVSLGCARVQCNNGWWFVSCNYSPQGNIIGQHPY* 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9101006 9101492 - Vvi3g799 Vvi3g799 784474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g799 161 Pfam Cysteine-rich secretory protein family 33 149 IPR014044 -
Vvi3g799 161 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Vvi3g799 161 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Vvi3g799 161 PRINTS Allergen V5/Tpx-1 family signature 117 133 IPR001283 -
Vvi3g799 161 PRINTS Allergen V5/Tpx-1 family signature 144 157 IPR001283 -
Vvi3g799 161 SUPERFAMILY PR-1-like 19 161 IPR035940 -
Vvi3g799 161 Gene3D CAP 26 161 IPR035940 -
Vvi3g799 161 PRINTS Venom allergen 5 signature 48 66 IPR002413 -
Vvi3g799 161 PRINTS Venom allergen 5 signature 116 135 IPR002413 -
Vvi3g799 161 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 19 161 IPR001283 -
Vvi3g799 161 SMART SCP_3 27 157 IPR014044 -
Vvi3g799 161 CDD CAP_PR-1 29 161 - -
Vvi3g799 161 ProSitePatterns CRISP family signature 2. 144 155 IPR018244 GO:0005576
Vvi3g799 161 ProSitePatterns CRISP family signature 1. 118 128 IPR018244 GO:0005576
Vvi3g799 161 PANTHER PATHOGENESIS-RELATED PROTEIN 1 19 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g799 K13449 PR1; pathogenesis-related protein 1 - vvi:100263556 352.058
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g799 Blo02g00914 . Bda06g01146 . Bpe07g00300 . . Bma12g00312 Cmo19g00541 . . . . . . . Cpe15g00420 . . . . . . . Cla02g00709 Cam02g0746 Cec02g0757 Cco02g0784 Clacu02g0752 Cmu02g0746 Cre02g1061 . Cone8ag1053 . . Lsi03g00626 Csa07g00658 . Cme01g00144 . . . . . Bpe05g00458 . . . . . Cma11g01690 Cma19g00532 . . . Cpe01g00380 . . . . . . . . . . . . . . . . Chy01g00153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127