Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g802 ATGGGGTTTCACAAGTTTCTCTTAGCCATTTACATCTTTGGTTCAGCCTTGGCTCATTTCTCACTAGCTCAGAGCTCCCCCCAGGACTATGTGGACGCCCACAACGCTGCACGGGCACAGGTAGGAGTGCAGCCCATCACATGGAATGAGACAGTGGCAGCTTACGCCAGGAGATATGCTAGCAGCCGGGTTGCTGAGCAGTGCAGCATGGAGCATTCAGGAGGGCCTTACGGAGAGAACCTTGCTGAAGGGTATGGTTCAATCGGTTCATTGACAGGCACTGATGCGGTGAACCTGTGGGTGGGGGAGAAGCCTAATTATGACTACAACTCCAACTCATGCGTTGGTGGGAAATGCGGGCACTATACTCAAGTTGTTTGGCGCAACTCAGTGCGCCTTGGGTGCGCTAGGGTTCAATGCAACAATGGAGGGTGGTTCGTCACATGCAACTACGATCCACCGGGCAACTATGTCGGACAGCGTCCTTATTGA 492 53.25 MGFHKFLLAIYIFGSALAHFSLAQSSPQDYVDAHNAARAQVGVQPITWNETVAAYARRYASSRVAEQCSMEHSGGPYGENLAEGYGSIGSLTGTDAVNLWVGEKPNYDYNSNSCVGGKCGHYTQVVWRNSVRLGCARVQCNNGGWFVTCNYDPPGNYVGQRPY* 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9120044 9130663 - Vvi3g802 Vvi3g802 784477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g802 163 SUPERFAMILY PR-1-like 25 163 IPR035940 -
Vvi3g802 163 SMART SCP_3 25 159 IPR014044 -
Vvi3g802 163 CDD CAP_PR-1 27 163 - -
Vvi3g802 163 ProSitePatterns CRISP family signature 1. 120 130 IPR018244 GO:0005576
Vvi3g802 163 Gene3D CAP 25 163 IPR035940 -
Vvi3g802 163 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 18 163 IPR001283 -
Vvi3g802 163 Pfam Cysteine-rich secretory protein family 31 151 IPR014044 -
Vvi3g802 163 PANTHER PATHOGENESIS-RELATED PROTEIN 1 18 163 - -
Vvi3g802 163 PRINTS Allergen V5/Tpx-1 family signature 46 64 IPR001283 -
Vvi3g802 163 PRINTS Allergen V5/Tpx-1 family signature 96 109 IPR001283 -
Vvi3g802 163 PRINTS Allergen V5/Tpx-1 family signature 146 159 IPR001283 -
Vvi3g802 163 PRINTS Allergen V5/Tpx-1 family signature 119 135 IPR001283 -
Vvi3g802 163 ProSitePatterns CRISP family signature 2. 146 157 IPR018244 GO:0005576
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g802 K13449 PR1; pathogenesis-related protein 1 - vvi:100251560 294.664
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g802 . . Bda06g01145 . . . . . Cmo19g00540 . . . . . . Cpe04g00339 Cpe15g00419 . . . . . . . Cla02g00713 Cam02g0763 Cec02g0761 Cco02g0787 Clacu02g0754 Cmu02g0748 Cre02g1065 . . . . Lsi03g00627 Csa07g00657 . Cme01g00145 . . . . . . . . Sed07g1155 . . Cma11g01688 . . . . . Bhi11g01091 Tan01g0594 Cmetu07g1308 . . . . . . . . . . . Lsi03g00997 . Chy01g00154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127