Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g813 ATGTACTCTCTCATGTCTTCGCCTTCCATCTCTTCATCTTCCTCCTCCTTTTTAGGCCAAACCCACTTCGATTCCAGCTACCAAAAAGAGAGCCTGGCAAATTTTAGAAACCCAAATGCTTGCCTTCCCACAAAAGATAGTTGGATATGTAAATGTGTGGCAACACCTTCCACAGAGACGACTGCTCACACGACAAAGGTCTCTCGCAATGCAAATATGGCCAAACTTCAAGCTGGTTATTTGTTTCCAGAGATAGCCAGAAGAAGGTCAGCACACATGCTAAAGTACCCTGATGCACAAGTGATAAGCCTTGGAATTGGTGACACTACTGAGCCCATTCCAGAAGTTATAACTTCTGGTATGGCAAAGAAAGCACATGCATTGTCAACACTAGAGGGTTACAGTGGTTATGGAGCTGAACAAGGTGAAAAACAATTGAGAGCTGCAATTGCTTCGACCTTTTATGGTGACCTCAGCATAGAGGAAAGTGATATATTTGTCTCTGATGGTGCAAAATCTGACATATCTCGCCTTCAGGTCATGTTTGGGTCTAATGTTACAATGGCAGTGCAAGACCCATCATACCCGGCTTATGTAGACTTAAGTGTTATCTTGGGCCAGACTGGGCAGTTTCAGAAGGATGTTGAGAAGTATGGAAACATCGAATACATGAAGTGTAATCCAGAGAATGGTTTCTTTCCTGATTTATCTACTGTTTCGCGAACCGATATCATTTTTTTCTGTTCACCATACAATCCCACTGGTAATGCTGCAACAAGGGAGCAACTGACCCGACTTGTACAGTTTGCCAAGGACAATGGATCAATTCTAGTGTATGATTCGGGATATGCCATGTATATCTCGGATGACAGCCCAAGGTCCATCTTTGAAATTCCTGGAGCCAAAGAGGTTGCAATTGAGGTATCATCATTTTCCAAATATGCTGGGTTCACTGGAGTCCGTCTTGGTTGGACTGTGGTTCCAAAGGAGCTTCTATATTCAGATGGATTTCCTGTTGCCAAGGACTTTAACCGCATTGAATGTACAACCTTCAACGCTGCATCCAACATTTCTCAAGCTAGTGGTCTGGCTTGTCTTTCACCAGAAGGCCTAGAGGCTATGCATAAACTGGTAGGTTTCTACAAAGAAAATACTAATATAATCATGGAGACATTCACTTCTCTTGGTTTTAGCGTGTACGGAGGTAAGAATGCACCATATGTTTGGGTTCATTTCCCTGGTCAAAGCTCATGGGACGTGTTCAGCGAGATACTTGAGAAGACCCATGTGGTAACAACACCTGGCAGTGGTTTCGGACCAGCTGGTGATGGTTTCATTAGGGTTTGTGCTTTTAGTCACAGAGGCAATGTTCTAGAGGCCTGCAAAAGATTCAAGCGGTTATACAAGTGA 1410 43.55 MYSLMSSPSISSSSSSFLGQTHFDSSYQKESLANFRNPNACLPTKDSWICKCVATPSTETTAHTTKVSRNANMAKLQAGYLFPEIARRRSAHMLKYPDAQVISLGIGDTTEPIPEVITSGMAKKAHALSTLEGYSGYGAEQGEKQLRAAIASTFYGDLSIEESDIFVSDGAKSDISRLQVMFGSNVTMAVQDPSYPAYVDLSVILGQTGQFQKDVEKYGNIEYMKCNPENGFFPDLSTVSRTDIIFFCSPYNPTGNAATREQLTRLVQFAKDNGSILVYDSGYAMYISDDSPRSIFEIPGAKEVAIEVSSFSKYAGFTGVRLGWTVVPKELLYSDGFPVAKDFNRIECTTFNAASNISQASGLACLSPEGLEAMHKLVGFYKENTNIIMETFTSLGFSVYGGKNAPYVWVHFPGQSSWDVFSEILEKTHVVTTPGSGFGPAGDGFIRVCAFSHRGNVLEACKRFKRLYK* 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9296797 9310939 + Vvi3g813 Vvi3g813 784488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g813 469 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 10 469 - -
Vvi3g813 469 Pfam Aminotransferase class I and II 100 463 IPR004839 GO:0009058|GO:0030170
Vvi3g813 469 SUPERFAMILY PLP-dependent transferases 80 464 IPR015424 -
Vvi3g813 469 PANTHER AMINOTRANSFERASE 10 469 IPR019942 GO:0008483
Vvi3g813 469 CDD AAT_like 102 466 - -
Vvi3g813 469 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 68 466 IPR019942 GO:0008483
Vvi3g813 469 Gene3D - 111 368 IPR015421 GO:0003824
Vvi3g813 469 Gene3D Aspartate Aminotransferase, domain 1 81 465 IPR015422 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g813 K10206 E2.6.1.83; LL-diaminopimelate aminotransferase [EC:2.6.1.83] - vvi:100244650 850.892
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g813 . . . . . . Bma05g00631 . . . . . . . . . . . . . . . . . Cla10g00945 Cam10g0968 Cec10g1002 Cco10g0963 Clacu10g0990 Cmu10g1773 Cre10g1147 Cone12ag1018 Cone8ag1048 . . . . . . . Blo13g00238 . . . Bpe05g00455 . . . Cmo04g00449 . . . . . Cpe14g00243 Cpe01g00377 Bhi11g01087 . . . Hepe07g0382 Mch10g0394 . . . . . . . . Lsi03g00994 . . Cme07g02224
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006830 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 37