Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g817 ATGTATTCATTTTTAAGCATAACTACTGATTTTGGCATTTTGAACATTTCAAAATTTCTGCCACTGCTTAGAAGACATTACCAATTATTTTCAGCAGCCACAAGTTCTCCGCATTTCTCATCATATGGCCTTGAAAACCAGAATGAAGAGATTGATTTCAATAGTTTATTTGATTCATGCACCAAAACCCTCCTTGCAAAGCGCCTTCATGCCCTTCTTGTGGTGTCAGGAAAAATCCAAAGCAATTTTATCTCAATTCGTCTCGTCAATCTTTATGCTAGCCTTGGTGATGTATCCTTGTCCCGTGGCACCTTTGATCAGATCCAACGCAAGGATGTCTATACCTGGAACTCGATGATATCTGCTTATGTTCGCAATGGCCATTTCCGTGAAGCTATAGATTGTTTCTATCAGCTGTTATTGGTGACCAAGTTTCAAGCTGATTTCTACACTTTTCCTCCAGTTTTGAAAGCTTGTCAAACTCTATTGGGGGATATTTCAACCGCAACACTAATCCATTTGTATGTCATAAAACATGGTTTAGAGTTTGAATTATTTGTGTCTAATGCCTTGATTAACATGTATGCTAAATTTGGTAACTTGGGGGATGCACAGAAAGTTTTTCAACAAATGTTTTTAAGGGATGTGGTGTCGTGGAACTCAATAATTGCTGCCTATGAGCAGAATGATGATCCAGTTACTGCACGTGGGTTCTTTTTCAAGATGCAGCTAAATGGACTTGAGCCTGATTTATTAACACTAGTGAGTTTAGCTTCTATTGCTGCTCAGTCTAGGGATTATAAAAATAGCAGGTCTGTTCATGGATTCATCATGAGAAGGGATTCTGCACATAAAGTTTTCAACCTAATCCCAGTTAAAGATGTGGTTTCATGGAACACTTTGATCTCAGGTTATACTCAGAATGGTCTTGCAAGTGAGGCAATTGAAGTATATAGAATGATGGAGGAGTGCAGGGAGATTAAACTTAATCAAGGGACTTGGGTAAGCATTCTAGCAGCTTATGCCCATGTTGGGGCCTTGCAACAAGGGATGAGAATTCATGGGCACTTAATTAAGACCAATCTCCACTTGGATGTTTTTGTGGGTACCTGCCTCATTGACTTGTATGGAAAATGTGGTAGATTAGTGGATGCAATGTGCTTATTCTATCAAGTGCCCCGGGAGAGTTCTGTCCCTTGGAATGCCATAATATCCTACTATAGCTTTGTGTTGCAGGATGTTGAGGAGGATGAAAAGGAGCATATCCTCACTAGTCATAGCGAGAGATTAGCTATTGCATTTGGAATCATTAGCACCCCTCCTAAAAGTGCTATTCGGATCTTCAAGAACTTGCGGGTTTGTGGGGATTGCCACAATGCAACCAAATTCATTTCAAGGATTACCGAGAGGGAGATTGTGGTGAGGGATTCAAAACGCTTCCATCACTTTAAGAATGGAATATGTTCTTGCGGAGACTACTGGTAA 1485 40.07 MYSFLSITTDFGILNISKFLPLLRRHYQLFSAATSSPHFSSYGLENQNEEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISYYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW* 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9373662 9376239 + Vvi3g817 Vvi3g817 784492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g817 494 Pfam DYW family of nucleic acid deaminases 408 494 IPR032867 GO:0008270
Vvi3g817 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 169 - -
Vvi3g817 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 281 406 - -
Vvi3g817 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 408 480 - -
Vvi3g817 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 163 263 - -
Vvi3g817 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 147 IPR002885 -
Vvi3g817 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Vvi3g817 494 Pfam PPR repeat 189 212 IPR002885 -
Vvi3g817 494 Pfam PPR repeat 370 392 IPR002885 -
Vvi3g817 494 Pfam PPR repeat 217 247 IPR002885 -
Vvi3g817 494 Pfam PPR repeat 114 138 IPR002885 -
Vvi3g817 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 324 IPR002885 -
Vvi3g817 494 TIGRFAM PPR: pentatricopeptide repeat domain 217 250 IPR002885 -
Vvi3g817 494 TIGRFAM PPR: pentatricopeptide repeat domain 296 324 IPR002885 -
Vvi3g817 494 TIGRFAM PPR: pentatricopeptide repeat domain 114 139 IPR002885 -
Vvi3g817 494 Gene3D Tetratricopeptide repeat domain 361 439 IPR011990 GO:0005515
Vvi3g817 494 Gene3D Tetratricopeptide repeat domain 278 360 IPR011990 GO:0005515
Vvi3g817 494 Gene3D Tetratricopeptide repeat domain 164 276 IPR011990 GO:0005515
Vvi3g817 494 Gene3D Tetratricopeptide repeat domain 45 163 IPR011990 GO:0005515
Vvi3g817 494 Pfam PPR repeat family 293 342 IPR002885 -
Vvi3g817 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 163 263 - -
Vvi3g817 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 169 - -
Vvi3g817 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 408 480 - -
Vvi3g817 494 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 281 406 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g817 - - - vvi:100254933 520.776
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g817 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010624 1 3 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 0 0 1 1 1 1 1 1 0 0 0 2 27