Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g821 ATGTTGCGGGGTTTAGCCTTCAATCCAAAAATTCTTCACTTCTCTCCTTCTCTTCCTCTCTTTTCCTTAAATTCCCCTTCTTTCTCTTCCCGTCTTCCATCTTTCTCAGGAAGAAAGAATTCCATTTTACAGGCGCAAGGACTTGGTTTTAAGAGTGAGAACCAACTAGGCACAACAATGGATCTAGGCAAGGAAGTGCCGGAATTAAATAGGAATCTTTATCCACCTATAGAGCCGTATAGTTCAGGTTTTTTGAAGGTTTCAGATCTTCATTCAATCTATTGGGAGCAGTCAGGAAATCCAAATGGGCATCCAGTTGTTTTCATTCATGGGGGCCCAGGAGGAGGGACCTCACCAAGTAACAGGACCTTCTTTGATCCTGATTTCTACCGAATCATTCTATTTGATCAGCGAGGTGCTGGTAAGAGCACACCCCATGCATGCTTGGTGGATAACACCACCTGGGATCTTGTCAATGACATTGAAAAGCTAAGAGAGCACTTGGAAATTCCAGAATGGCAGGTATTTGGTGGGTCATGGGGAAGTACACTGGCCCTTGCATATAGTCAGTCACACCCTGACAAGGTCACTGGTATGGTCCTTAGAGGGATCTTTCTGTTGCGGAAGAAGGAACTTGATTGGTTTTATGAGGGTGGTGCTGCTGCTATATATCCTGATGCTTGGGAGCCTTTTAGAGATCTTATTCCAGAAAATGAAAGGGATTGTTTAATTGATGCCTACCACAAGAGATTAAACTCTGATGATATGGAAACACAATATGCAGCTGCTAGAGCATGGACAAAATGGGAAATGATGACTGCTCATCTTCTTCCAAATGAAGAGAACATCAAGAAAGGTGATGATGATAAATTTTCATTGGCATTTGCAAGGATTGAAAATCATTACTTTGTGAACAAGGGTTTCTTTCCTTCAGATTCATTCCTGTTGGATAATATTGAAAAGATAAGGCATATTAATGCTACAATTGTACAGGGAAGATATGATATGTGCTGTCCTATTATGACAGCTTGGGATCTTCATAAAGCTTGGCCAGAGGCAGATTTCAAGATTGTGCCAGATGCTGGTCATTCGGCCAACGAACTAGGAATAGCTGCTGAACTTGTTGCTGCAAATGAGAAGCTGAAGAATATTATCAAGAATGGTGGACCCTGA 1173 41.94 MLRGLAFNPKILHFSPSLPLFSLNSPSFSSRLPSFSGRKNSILQAQGLGFKSENQLGTTMDLGKEVPELNRNLYPPIEPYSSGFLKVSDLHSIYWEQSGNPNGHPVVFIHGGPGGGTSPSNRTFFDPDFYRIILFDQRGAGKSTPHACLVDNTTWDLVNDIEKLREHLEIPEWQVFGGSWGSTLALAYSQSHPDKVTGMVLRGIFLLRKKELDWFYEGGAAAIYPDAWEPFRDLIPENERDCLIDAYHKRLNSDDMETQYAAARAWTKWEMMTAHLLPNEENIKKGDDDKFSLAFARIENHYFVNKGFFPSDSFLLDNIEKIRHINATIVQGRYDMCCPIMTAWDLHKAWPEADFKIVPDAGHSANELGIAAELVAANEKLKNIIKNGGP* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9413164 9433562 - Vvi3g821 Vvi3g821 784496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g821 390 PRINTS Alpha/beta hydrolase fold signature 129 144 IPR000073 -
Vvi3g821 390 PRINTS Alpha/beta hydrolase fold signature 175 188 IPR000073 -
Vvi3g821 390 PRINTS Alpha/beta hydrolase fold signature 189 202 IPR000073 -
Vvi3g821 390 SUPERFAMILY alpha/beta-Hydrolases 71 366 IPR029058 -
Vvi3g821 390 Gene3D alpha/beta hydrolase 70 382 IPR029058 -
Vvi3g821 390 PANTHER PROLINE IMINOPEPTIDASE 53 383 IPR005944 GO:0004177|GO:0005737|GO:0006508
Vvi3g821 390 TIGRFAM pro_imino_pep_1: prolyl aminopeptidase 78 381 IPR005944 GO:0004177|GO:0005737|GO:0006508
Vvi3g821 390 Pfam alpha/beta hydrolase fold 105 368 IPR000073 -
Vvi3g821 390 PRINTS Prolyl aminopeptidase (S33) family signature 106 114 IPR002410 GO:0006508|GO:0008233
Vvi3g821 390 PRINTS Prolyl aminopeptidase (S33) family signature 132 143 IPR002410 GO:0006508|GO:0008233
Vvi3g821 390 PRINTS Prolyl aminopeptidase (S33) family signature 175 189 IPR002410 GO:0006508|GO:0008233
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g821 K01259 pip; proline iminopeptidase [EC:3.4.11.5] - vvi:100242944 785.023
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g821 . Blo03g00047 Bda06g01143 . Bpe07g00301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1060 Cone10ag1075 . . . . . . . . . . . . . . Cmo16g00310 . . . . Cpe14g00242 . Bhi11g01083 . . . . . . . . . . . . . Lsi03g00992 . . Cme07g02225
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007769 1 5 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35