Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g822 ATGCAAATCTTCCTTCTTGCTACATTTAGTCAAATTTCAAAGCACAGTGACTCAGCCACCTCGTCACTCGAAAAATCCAACACGAGTGTTTTCGATACATGGACACAGGGCAATTCCGTTCGCAATTTCACTGGAATCGTCTGCAATTCCAATGGGTTTGTTACAGAGATATTGCTTCCTGAGCAACAACTGGAGGGGGTTCTTCCTTTTGATTCCATATGTGAGTTGAAATCGCTTGAAAAGATCGATCTGGGAGCAAATGTTTTGCATGGAGGCATCGGCGAAGGCTTGAAGAATTGCAGTCAGTTGCAGTACTTGGACTTGGGGGTCAATTTTTTTACGGGAACGGTGCCGGAGTTGTCATCTTTGAGTGGCCTGAAATTCTTAAATTTAAACTGTAGCGGATTTTCGGGGAGTTTTCCATGGAAATCACTGGAGAATCTCACCAATCTTGAGTTTTTGAGCCTCGGAGACAATCAATTTGAGAGAAGTTCATTTCCTCTGGAGATTCTGAAGCTCGATAAATTGTATTGGCTTTATCTTACAAACAGCAGCTTAGAAGGACAAGTTCCAGAAGGAATTGGAAATTTGACACAGCTTCAAAATCTCGAACTCTCGGATAATTACCTGCATGGGGAAATTCCGGTGGGAATCGGAAAACTTTCCAAGCTTTGGCAGCTCGAGCTATATGACAACAGGTTTTCTGGAAAGTTCCCGGAAGGATTCGGAAACCTTACGAACCTTTCTCTAGCACAATTGTTCTTGGCTGACAATGAATTTTCTGGTGAATTGCCCGAGGAAATCTCGAAAGCTTCATTGTTAGTGGTTATTGATCTGAGTTCGAACAAGTTTTCGGGTAAAATTCCAGCGACAATCGGAGAATTGAAAGCATTAAACAGTCTTAATCTGCAAGAAAACAAGTTCTCCGGCCCCATTCCAGAGTCCCTAGGCTCGTGTGTTTCCTTAGACGATGTCAACCTCTCCGGTAATTCTCTTTCCGGTGAAATCCCTGAGAGTCTTGGAACTTTATCCACTCTAAACTCCTTAAACCTATCCAACAACCAACTTTCCGGCGAAATTCCCTCGAGTCTGTCATCGCTTAGATTGAGTCTTCTTGATCTAACAAACAATAAGTTGAGCGGCCGCGTACCGGAATCTTTGTCAGCGTATAACGGGAGCTTCTCCGGAAATCCTGATCTGTGCAGTGAGACCATCACGCATTTCCGATCATGCTCGTCGAATCCGGGCTTGTCCGGTGATCTCAGGAGAGTCATCTCCTGCTTCGTCGCCGTAGCAGCCGTCATGCTCATCTGCACCGCATGCTTCATCATCGTCAAAATAAGATCCAAAGATCACGACCGTCTGATCAAATCAGATTCTTGGGATCTGAAATCATACCGTTCGCTGTCCTTCTCCGAATCAGAAATCATCAACTCAATCAAACAAGACAACCTCATCGGCAAAGGCGCATCGGGAAACGTGTACAAGGTTGTCCTCGGGAACGGCACCGAGCTCGCCGTGAAACACATGTGGAAATCAGCCTCCGGCGACAGGAGAGCATGCCGGAGCACGACGGCGATGTTGGGGAAACGTAATAGACGGCCTTCGGAGTACGAGGCGGAGGTGGCGACGCTGAGCTCGGTGAGGCACATGAACGTGGTGAAACTGTACTGTAGCATAACGAGCGAGGACTCGGATCTGCTGGTTTACGAGTACCTGAGGAACGGGAGCTTGTGGGACCGGTTGCACACGTGTCAGAAAATGGAGATGGATTGGGATGTGCGATACGACATCGCGGTGGGGGCCGGTAGAGGATTAGAGTGGGGACACGACGCATGTGATTGCTGGCACCCATGGGTACATAGCTCCCGAGTACGCATACACATGCAAGGTAACGGAGAAGAGCGATGTGTACAGCTTTGGGGTGGTGTTGATGGAGTTGGTGACAGGTAA 1953 47.47 MQIFLLATFSQISKHSDSATSSLEKSNTSVFDTWTQGNSVRNFTGIVCNSNGFVTEILLPEQQLEGVLPFDSICELKSLEKIDLGANVLHGGIGEGLKNCSQLQYLDLGVNFFTGTVPELSSLSGLKFLNLNCSGFSGSFPWKSLENLTNLEFLSLGDNQFERSSFPLEILKLDKLYWLYLTNSSLEGQVPEGIGNLTQLQNLELSDNYLHGEIPVGIGKLSKLWQLELYDNRFSGKFPEGFGNLTNLSLAQLFLADNEFSGELPEEISKASLLVVIDLSSNKFSGKIPATIGELKALNSLNLQENKFSGPIPESLGSCVSLDDVNLSGNSLSGEIPESLGTLSTLNSLNLSNNQLSGEIPSSLSSLRLSLLDLTNNKLSGRVPESLSAYNGSFSGNPDLCSETITHFRSCSSNPGLSGDLRRVISCFVAVAAVMLICTACFIIVKIRSKDHDRLIKSDSWDLKSYRSLSFSESEIINSIKQDNLIGKGASGNVYKVVLGNGTELAVKHMWKSASGDRRACRSTTAMLGKRNRRPSEYEAEVATLSSVRHMNVVKLYCSITSEDSDLLVYEYLRNGSLWDRLHTCQKMEMDWDVRYDIAVGAGRGLEWGHDACDCWHPWVHSSRVRIHMQGNGEERCVQLWGGVDGVGDR* 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9439066 9442128 - Vvi3g822 Vvi3g822 784497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g822 650 SMART LRR_typ_2 197 221 IPR003591 -
Vvi3g822 650 SMART LRR_typ_2 343 367 IPR003591 -
Vvi3g822 650 SMART LRR_typ_2 148 173 IPR003591 -
Vvi3g822 650 SMART LRR_typ_2 295 319 IPR003591 -
Vvi3g822 650 Gene3D Ribonuclease Inhibitor 17 165 IPR032675 -
Vvi3g822 650 Pfam Leucine Rich Repeat 346 367 IPR001611 GO:0005515
Vvi3g822 650 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 20 248 - -
Vvi3g822 650 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 249 615 - -
Vvi3g822 650 Gene3D Transferase(Phosphotransferase) domain 1 464 631 - -
Vvi3g822 650 Gene3D Ribonuclease Inhibitor 270 412 IPR032675 -
Vvi3g822 650 Gene3D Ribonuclease Inhibitor 166 269 IPR032675 -
Vvi3g822 650 ProSiteProfiles Protein kinase domain profile. 480 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g822 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 20 248 - -
Vvi3g822 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 249 615 - -
Vvi3g822 650 Pfam Protein kinase domain 482 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g822 650 SUPERFAMILY L domain-like 42 392 - -
Vvi3g822 650 ProSiteProfiles Leucine-rich repeat profile. 345 368 IPR001611 GO:0005515
Vvi3g822 650 ProSitePatterns Protein kinases ATP-binding region signature. 486 508 IPR017441 GO:0005524
Vvi3g822 650 SUPERFAMILY Protein kinase-like (PK-like) 468 613 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g822 - - - vvi:100248069 739.184
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g822 Vvi18g1600 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g822 . . . . . . . . Cmo19g00527 . . . . . . . Cpe15g00410 Bhi05g00991 . . . . . . Cla02g00724 . . . . . . Cone4ag1267 Cone7ag0877 Cone17ag1152 . Lsi03g00641 Csa07g00651 . Cme01g00152 . . . . . . . . . . . . Cma19g00514 . Car19g00389 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002812 1 2 1 1 1 1 2 1 1 2 2 1 3 2 1 3 2 3 2 1 2 1 2 2 2 2 1 2 2 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76579 PF00069 Pkinase 4.20E-12 CL0016 Vvi PK