Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g824 ATGGCTATGGAAGGATGGCTGGGTTTGTATGGATTCCATGCGCGTGGAAACCCAACGTCCAAGATTCCTGGACTTTCCTCCGTGTGTTTTCCTAATTCTCTCTCTCTTTTTTTTTTTCTTGTTTCTCTCTACAATCCATCCTCCTTTCTCCCGACTACAATCTGCGATATGGCTCCCCAAACCCTAATTTTCTTTCTGCTCTCTCTCATGGTTTTTTCATCCTCAACCAAGGCCTTGATTTCGTCTCAAGATTTCAATCCCCCCTCCCCCAAAGCCTTTTCTGATTTGAAGGACGCGATTGTGAAGGGGCTAGGGTTTCAGTCGGAGGATTTGAAGGTATCGGGGTTCGATCTAAGAGACGCGTTGGTGGGGCATTCGGTGGCGTACGAGTTCAATGTTGAGATTGATAACAAGGTTCTTCCGATTAAGCTTCTTGAGGATGTGAACCGCTGGGAGTACGTGGATTTGCCGATATTTCGTGTGGATCAGGACAACGAAAATGGCTTGGTCCCGAGGAAATCGGAGAAAAGATTGCCGGTTTTGGCCCCGTTTCAGTTGGCCGGACCCATGGAGCTCTGGATTCAAGATGCCAAGGATATGCGGATTTCGCTGCCGCATGATGTGGATGCCGGTGAGCTAAAGAAAGTAATATTAGCAGACGGTGCTGTGGTAACTGTCAAGGGTGCTAGATCTGTTAGCCTCCGCCACCCAATTGATCTCCCACTTCCTTTCAACAGAAGCAATAATGGTTTTGCCTCGGGAATCCTAGCTCTGGCTGAACGTCTTCGCCATGCTGCTCGTACTCAAGGGGAGCCACTCCTTTCTCTCCGCATTGTTGGCCCAACCTCCCTCACATCTCCCTCCCCATCAGCATCATCATCTTCCAGTAACAGGCTCAAACTTAAACGCCTGGCACCTGGCCTCGTGGAACTATCACTACCCTCAAAAGCCAGTACCATTGAAACCCTCCCAGCAGTTGATCTCCAAGAAGAAGCCACTGCCCTTCTGACTCCAGTTCAGTTCACTACAATGTGGCCTCTGGCTTTCATAAACGGCTCCAACTCTAATTTGCTTGGTTTTGAGGCTCTGCTCGCATCTTTGCTGGGTCCAAAGGCATCCAAGGAAGGCTCCTTCAGGCTGCTGAAGGCAGACGTCTCAGCTCAGACATTTGTGAAGATTGGCTTTGGGGTGGAGAAGAAGTTGAAAGAAGGAGATGGGTTCAATCTGGAGGGCTTGCCTGAGTGGAGGACAAAGCCCAAGGCAGTTACGATGCACTTTGAGGTGCTTGCTAAGGTTGAGGGCAATAAAGTTGTACCAGAGAGGATTGTTCCAGTTAACCCTGTTGTTGGGGAGGATACCGTGGCGCCCAATGTGCTCTCTGGCAATGCGACCATGTCCAAGATCCCTATCGTTCATGTTCCCTCTGACCCTTTCACCTTGGGATTTGTGGAATGGGTGGCTTTTGTTCAGATTAGCCAAGGAAATGTCTTGTGA 1494 49.53 MAMEGWLGLYGFHARGNPTSKIPGLSSVCFPNSLSLFFFLVSLYNPSSFLPTTICDMAPQTLIFFLLSLMVFSSSTKALISSQDFNPPSPKAFSDLKDAIVKGLGFQSEDLKVSGFDLRDALVGHSVAYEFNVEIDNKVLPIKLLEDVNRWEYVDLPIFRVDQDNENGLVPRKSEKRLPVLAPFQLAGPMELWIQDAKDMRISLPHDVDAGELKKVILADGAVVTVKGARSVSLRHPIDLPLPFNRSNNGFASGILALAERLRHAARTQGEPLLSLRIVGPTSLTSPSPSASSSSSNRLKLKRLAPGLVELSLPSKASTIETLPAVDLQEEATALLTPVQFTTMWPLAFINGSNSNLLGFEALLASLLGPKASKEGSFRLLKADVSAQTFVKIGFGVEKKLKEGDGFNLEGLPEWRTKPKAVTMHFEVLAKVEGNKVVPERIVPVNPVVGEDTVAPNVLSGNATMSKIPIVHVPSDPFTLGFVEWVAFVQISQGNVL* 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9454986 9459930 - Vvi3g824 Vvi3g824 784499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g824 497 PANTHER TUNICAMYCIN INDUCED PROTEIN 60 480 - -
Vvi3g824 497 PANTHER TUNICAMYCIN INDUCED PROTEIN 60 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g824 - - - vvi:100260026 813.913
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g824 . . . . . Bpe12g00724 . . . Cmo11g01440 . . . . Sed06g0823 . . Bhi05g00989 Tan02g1085 Cmetu01g0416 Lac12g0127 Hepe02g0675 . . Cla02g00727 Cam02g0774 Cec02g0771 Cco02g0801 Clacu02g0769 Cmu02g0761 Cre02g1076 . . Cone3ag1062 Cone10ag1077 . Csa07g00648 . Cme01g00154 . . . . . . . . . . . . . Car11g01156 . . . . . . . . . . . . . . . . . . . Chy01g00163 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009516 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 2 33