Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g826 ATGGAGATCTCACCTCTGAGAGGATTATCTGAAGTGGGAATGGAGGATCCGACTTTTATTCATCCATGGCAGACGAACTTTCTTGAGGAGCTCACTGTACTGCCAATGGAAGCTGCATTTGGAGAGCATCTGTATCAGGCTTTCAGTCATCACCAGTCCTTCAACCTCAAGCCTTCAATGGAGATCAATTCCCATGTTGGTTTGGATAGGCCTCTGAAACTACTCAAACCCAATAGCTGGAACCCCTCCAATACTAATGATATGGATATGCCACACCCACTTGTTCCTTCTTCTCCCAATGTTTTCTCCTTTGTCAATTCCAACTACACGAATCAAGTACCTGTTGTGAAGCCTAAGGAGGAGGCAGTGTCTTCCAAAAGCAGTGCCACTTTCCCTTCTGATGGTTTGGTCTCTCAAGGCTTGTTTGAGAACCAAAACTATGTGTTTAAAGCCAGCCAAGGAGCTAAAAGAATCAGCACCACCACTGCTAGGCATTCTCAGACTCAAGATCATATAATAGCAGAAAGGAAGCGTCGAGAGAAGCTCAGTCAGCGCTTCATAGCTTTATCAGCCATTGTTCCTGGCCTAAAGAAGATGGATAAGGCTTCTGTTCTTGGGGATGCTATCAAGTACTTGAAACAACTGCAGGAGCGAGTTAAGACACTGGAGGAGCAAACAAGGAAGAAAACAACGGAATCCGTGGTCTTCGTGAAGAAATCCCAAGTCTTTCTTGATGGAGATAACTCTTCCTCTGACGAGGATTTCTCCGGCAGCCCCTTAGACGAGCCACTACCAGAAATTGAAGCGAGGTTCTCAGACAAAAGTGTCCTTATCCGAATCCACTGTGAGAAAAGGAAAGGAGTTGTGGAGAAACTAGTAGCTGAAGTTGAGGGCCTCCATCTCACAGTCATCAATAGCAGTGTCATGACATTTGGGAACTCAGCTCTGGATGTCACCATTATCGCTGAGATGGAAGTGGAATTCAGCATGACAGTGAAGGACCTTGTGAAGAAACTACATGCAGGGCTCAAATAG 1035 45.6 MEISPLRGLSEVGMEDPTFIHPWQTNFLEELTVLPMEAAFGEHLYQAFSHHQSFNLKPSMEINSHVGLDRPLKLLKPNSWNPSNTNDMDMPHPLVPSSPNVFSFVNSNYTNQVPVVKPKEEAVSSKSSATFPSDGLVSQGLFENQNYVFKASQGAKRISTTTARHSQTQDHIIAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQERVKTLEEQTRKKTTESVVFVKKSQVFLDGDNSSSDEDFSGSPLDEPLPEIEARFSDKSVLIRIHCEKRKGVVEKLVAEVEGLHLTVINSSVMTFGNSALDVTIIAEMEVEFSMTVKDLVKKLHAGLK* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9524909 9527107 + Vvi3g826 Vvi3g826 784501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g826 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 229 IPR036638 GO:0046983
Vvi3g826 344 CDD bHLH_AtNAI1_like 166 240 - -
Vvi3g826 344 Coils Coil 205 232 - -
Vvi3g826 344 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
Vvi3g826 344 Gene3D - 159 231 IPR036638 GO:0046983
Vvi3g826 344 SMART finulus 172 221 IPR011598 GO:0046983
Vvi3g826 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Vvi3g826 344 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 2 342 - -
Vvi3g826 344 PANTHER BHLH TRANSCRIPTION FACTOR 2 342 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14687 PF00010 HLH 2.40E-10 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g826 - - vvi:100248064 674.47