Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g827 ATGACGAAGCTGGAGCTCCGTGATCTCGGCACCACCGGCCTCATGCTCAGTTGCGTCGGCTTCGGAGCCTCTCCTCTCGGCAACGTCTTCGGTCTTGTTTCTGAGGATGACGCCATCGCCTCTGTTCGCGAGGCCTTTCGGCTTGGCATCAACTTTTTCGACACCTCTCCGTATTATGGAGGAACATTGTCTGAGAAAGTCCTTGGGAAGTGCCTTAAAGCAGTAGGAATGCCAAGAAATGAGTACATTGTCTCAACAAAGTGTGGCCGGTATGCTGAGGGCTTTGATTTCAGTGCTGAGAGAATAACTAGGAGCATTGATGAGAGTCTAGCAAGGTTGCAGCTTGATTATGTTGATATACTGCAATGCCATGATATCGAATTTGGGTCTCTTGATCAGGTTGTGAATGAGACGATTCCTGCCCTTCAGAAACTCAAGGAAGCAGGGAAGATCCGATTCATTGGTATCACTGGACTTCCCCTGGAAATTTTTACTTATGTGCTTGATAGAGTGCCACCTGGCTCAGTCGATGTGATTCTGTCATATTGTCACTATAGTATCAATGATACAACACTGGAGGATTTATTGCCTTACTTGAAGAGCAAGGGAGTTGGTGTGATCAGTGCTTCTCCACTTGCGATGGGACTCCTTACAGAGAGGGGCCCTCCAGAATGGCACCCTGCTTCTCCTGAACTTAAGTCTGCATGCCAAGCTGCTGCTGCTCATTGTAAAGAGAAGGGGAAGAATATTTCAAAGTTAGCCATGCAGTTCAGCTTGTCAAATAAAGATATTTCCTCTGTGCTGGTTGGCATGAACTCTATTAAACAGGTTGAAGAGAATGTTGCAGCTGCTACAGAACTTGCAATTTTTGGGAAGGATGAGGAAACTCTGTCAGAGGTTGAAGCTATACTAAACCCTGTGAAGAATCAGACATGGCCTAGTGGAATCCAGCAGAGCTGA 960 46.67 MTKLELRDLGTTGLMLSCVGFGASPLGNVFGLVSEDDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKCLKAVGMPRNEYIVSTKCGRYAEGFDFSAERITRSIDESLARLQLDYVDILQCHDIEFGSLDQVVNETIPALQKLKEAGKIRFIGITGLPLEIFTYVLDRVPPGSVDVILSYCHYSINDTTLEDLLPYLKSKGVGVISASPLAMGLLTERGPPEWHPASPELKSACQAAAAHCKEKGKNISKLAMQFSLSNKDISSVLVGMNSIKQVEENVAAATELAIFGKDEETLSEVEAILNPVKNQTWPSGIQQS* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9538946 9552380 + Vvi3g827 Vvi3g827 784502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g827 319 PANTHER GH17980P-RELATED 2 316 IPR020471 GO:0016491
Vvi3g827 319 CDD AKR_galDH 4 286 IPR044479 GO:0010349
Vvi3g827 319 Pfam Aldo/keto reductase family 19 284 IPR023210 -
Vvi3g827 319 SUPERFAMILY NAD(P)-linked oxidoreductase 5 303 IPR036812 -
Vvi3g827 319 Gene3D - 4 315 IPR036812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g827 K17744 GalDH; L-galactose dehydrogenase [EC:1.1.1.316] - vvi:100263479 629.787
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g827 . . . . . . . . Cmo19g00525 . . . . . . . Cpe15g00407 Bhi05g00984 . . . . . . Cla02g00730 Cam02g0776 Cec02g0774 Cco02g0803 Clacu02g0771 Cmu02g0764 Cre02g1078 Cone12ag1017 Cone8ag1046 . . Lsi03g00645 . . . . . . . . . . . . . . . Cma19g00512 . Car19g00386 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007468 1 3 3 0 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 1 36