Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g828 ATGGCTTCTCCCGAGATCGAAGTCGACTCAGACTCCAAAACTCCGAAAAACGAAGCCCACATCTTCGACGTTTTCTCCGCTTGTGCCTACGGAGATTTCCCAAAACTGCGGAAATTTGTAGAAGAAAACTGCGCTTCTCTCTCAAAGCCTGATGGAAATGGGTACTATGCTCTTCATTGGGCTTCTCTCAATAATTTCCCCGATATCGTGCAGTACGTCATCGAGCATGGCGGTGATGTGAATGCGGTCGATAATTCACAGCAGACGGCTTTGCATTGGTCTGCGGTTCGGGGTGCGGTTTCGGTGGCGGACATCCTTTTACAGAATGGAGCTCGGGTGGAGGCGGCTGATATTAATGGGTATCGGGCAGTTCATGTTGCTGCTCAATATGGACAAACAGCTTTCATAAATCACCTTGTTGCAAAGTACCATGCAGATTTTGATGCACCGGATAGAGATGGGAGAAGTCCTCTTCATTGGGCTGCCTATAAAGGATTTGCAGATACGATTCGATTACTTCTTTTTAGAGATGCATGCCAAGGGAGAACGGATAAAGAAGGTTGTACTCCTCTACACTGGGCGGCATTAAGAGGAAATGTGGAGGCATGTGCGGTGCTTGTACATGCAGGCACAAAGCAGGAACTAATGGTGAAAGACAATGCTGGATTTACTCCTGTTGAGCTTGCATCTGATAAAGGTCATCGGCATGTTGCCTCTTTCCTTTCTAATATTCAGCGAGCACACAGCAAACGTTGGAGAGACAAAGTTTGCAGTGGGAAAACAGGGAATAGTAGTTGTGCTCCTGTTCTATTTTGCATTGCAATAATTGTTATTATCCTCTTCATCAACACAGTTCTTGTAGCTCCTAATCTTACGAAGGTTACTGCTGTTGTTGGACTCTGGGGATGGATTTGTGTTTCTCTCGCTGTATGTTCATTGATAATGCTCTATAGATGTAGTAGTAAAGATCCGGGTTATATAAAAAAATCTGGTGGTTTGGGTAATCACACAGATGCAGAGGATCCACTGTTGAATATCAATCTCAACAATTCCTCCATATGGACGGGAAATTGGTCTCAACTTTGCCCCACTTGCAAGATAATTAGACCTGTTCGCTCAAAGCACTGCCCTACATGTAAGCGCTGTGTGGAACAATTTGACCACCACTGCCCTTGGATTTCAAATTGTGTAGGGAAGAAGAACAAATGGGACTTCTTTGTTTTTATCTGCCTGGGAGCTTTGTCCACATTCATTGGTGCTATTGTTGCAGTTCAAAGAATTTGGACAGCATTGCCAACATTGCGGGCAGAAGAAACTTGGATTCAATATGTGGTGGTTCAACATTCTGGTGTTGTTGCCTTTCTGGTTATGGACATAATTCTTTTGATGGCTAGTGTAACTTTGACAACGGCACAATCATCCCAGATAGCTCGGAATATCACCACTAATGAGTTGGCGAATTTCATCCGCTATGGGTATCTTCATGCTCCAGATGGGCGGTTCCGAAATCCATACAACCATGGGTGTCGAAAGAACTGTGCAGATTTTCTCATTTATGGCTACACTGATGATGAGGAAATAGCTTGGCCTCCATTACAGCAGGTTTCCACATAG 1614 44.49 MASPEIEVDSDSKTPKNEAHIFDVFSACAYGDFPKLRKFVEENCASLSKPDGNGYYALHWASLNNFPDIVQYVIEHGGDVNAVDNSQQTALHWSAVRGAVSVADILLQNGARVEAADINGYRAVHVAAQYGQTAFINHLVAKYHADFDAPDRDGRSPLHWAAYKGFADTIRLLLFRDACQGRTDKEGCTPLHWAALRGNVEACAVLVHAGTKQELMVKDNAGFTPVELASDKGHRHVASFLSNIQRAHSKRWRDKVCSGKTGNSSCAPVLFCIAIIVIILFINTVLVAPNLTKVTAVVGLWGWICVSLAVCSLIMLYRCSSKDPGYIKKSGGLGNHTDAEDPLLNINLNNSSIWTGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKKNKWDFFVFICLGALSTFIGAIVAVQRIWTALPTLRAEETWIQYVVVQHSGVVAFLVMDIILLMASVTLTTAQSSQIARNITTNELANFIRYGYLHAPDGRFRNPYNHGCRKNCADFLIYGYTDDEEIAWPPLQQVST* 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9553244 9614269 - Vvi3g828 Vvi3g828 784503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g828 537 ProSiteProfiles Ankyrin repeat region circular profile. 153 174 - -
Vvi3g828 537 ProSiteProfiles Ankyrin repeat region circular profile. 186 210 - -
Vvi3g828 537 SUPERFAMILY Ankyrin repeat 24 243 IPR036770 -
Vvi3g828 537 ProSiteProfiles Ankyrin repeat region circular profile. 53 85 - -
Vvi3g828 537 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Vvi3g828 537 Gene3D - 18 140 IPR036770 -
Vvi3g828 537 SMART ANK_2a 53 82 IPR002110 GO:0005515
Vvi3g828 537 SMART ANK_2a 221 250 IPR002110 GO:0005515
Vvi3g828 537 SMART ANK_2a 186 215 IPR002110 GO:0005515
Vvi3g828 537 SMART ANK_2a 153 182 IPR002110 GO:0005515
Vvi3g828 537 SMART ANK_2a 119 149 IPR002110 GO:0005515
Vvi3g828 537 SMART ANK_2a 86 115 IPR002110 GO:0005515
Vvi3g828 537 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Vvi3g828 537 ProSiteProfiles DHHC domain profile. 360 410 - -
Vvi3g828 537 Pfam DHHC palmitoyltransferase 360 486 IPR001594 GO:0016409
Vvi3g828 537 ProSiteProfiles Ankyrin repeat region circular profile. 86 117 - -
Vvi3g828 537 ProSiteProfiles Ankyrin repeat profile. 86 118 IPR002110 GO:0005515
Vvi3g828 537 ProSiteProfiles Ankyrin repeat profile. 119 152 IPR002110 GO:0005515
Vvi3g828 537 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Vvi3g828 537 Pfam Ankyrin repeats (3 copies) 184 242 IPR002110 GO:0005515
Vvi3g828 537 Pfam Ankyrin repeats (3 copies) 117 178 IPR002110 GO:0005515
Vvi3g828 537 Pfam Ankyrin repeats (3 copies) 27 116 IPR002110 GO:0005515
Vvi3g828 537 PANTHER PROTEIN S-ACYLTRANSFERASE 24 15 527 - -
Vvi3g828 537 PANTHER - 15 527 - -
Vvi3g828 537 Gene3D - 141 248 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g828 K20032 ZDHHC13_17, HIP14; palmitoyltransferase ZDHHC13/17 [EC:2.3.1.225] - vvi:100241204 1108.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g828 . . . . . . . . Cmo19g00523 . . . . . . . Cpe15g00405 Bhi05g00980 Tan02g1093 . Lac12g0121 . . . Cla02g00732 Cam02g0777 Cec02g0776 Cco02g0805 Clacu02g0772 Cmu02g0765 Cre02g1079 Cone12ag1016 Cone8ag1045 . . Lsi03g00647 . . . . . . . . . . . . . . . Cma19g00510 . Car19g00384 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006934 1 4 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 3 1 37