Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g833 ATGGGCAACAAAGGGGTAGTGAAAGAAATGGATGGGGATATTGGGCATGAAAGCGAGAGAATGGGCAGGACTCTGTACACAACCATGGGTGCTTGCAACACTCGTATAGAATCTCACAAACTTCTCTCCTTTCATCTCTTCATGATTTCCATTTTCTTCTTCCTAATATTCTTCCCTTCCGCAACTTCGTTGTCCTTCAACTTCTCCAGCTTTGGTTCAAATAACCATAATATATCCTTCGACGAAGCAGGAGACGCTGTATATTCTTCGGACGGATGCATCCAACTGACCAGAAACGAGAACGACAAGCAATCGAATGATAGTTGGGGTCGAGCCATGTATAGCGAGCGATTGTATCTCTGGGATCAGACCTCCAGAAATCTAACTGATTTCACTAGCAATTTCTCCTTTGTCATCAATTCACAAGGCTCCAGTCAGCATGCCGATGGACTTACGTTCTTCCTTAATGGTACCCAATTGCATACAGATACGTTGGGAGGAACTCTTGGTCTCGCCAACGAAAAGAATGAGACAAACAAAAGTGCAGTTACGGACAGTACCAATACTACGCAAAGCCTCTCTTACGAAATTGATCTGAGGGAATACTTGCCGGAATACGGTACTGGACCGAGGAAGTTTTCTTTTAATGAATTGGCTCTTGCGACCAGTAACTTTTCAGACGGAGAGAAGCTTGGAGAGGGAGGGTTTGGTGGGATCTTCTGTCGATTGAGGCACCGGAACTTGGTGCGGCTCATGGGCTGGCTTGTTGATCATGGTAAAGGTTTTGGAATTGTTTGGGTTTGGGACCTCTATGGCGTAGGAAAACTTCTTGAAGCTGCTGATCCAAGACTGTCTGCAGATTATGATGATCAACAAATGGAACGATTGATGATTGTTGGTCTTTGGTGTGCTCACCCGGATTGCAATGCTCGTCCTTCAATGAGGCAAGCAATTAGTGTCCTTAATTCTGAAGCTTTATTGCCTCTTCTTCCTATAAAAATGCCTGTGGCAATGTATTACGCTCCTCCGGCGCTGCAGACATCCTATAGCACTAGCCTTTCTGAGAGAAACCACACCCAGTTTTCCAACTCCTCTAATGGCACCGCGGACTCATCAAAGGTCTCAGAATCTTCTTCAACCTTGTCTCAATCCGCATCCCTATTGCACAGACGCTAA 1176 45.41 MGNKGVVKEMDGDIGHESERMGRTLYTTMGACNTRIESHKLLSFHLFMISIFFFLIFFPSATSLSFNFSSFGSNNHNISFDEAGDAVYSSDGCIQLTRNENDKQSNDSWGRAMYSERLYLWDQTSRNLTDFTSNFSFVINSQGSSQHADGLTFFLNGTQLHTDTLGGTLGLANEKNETNKSAVTDSTNTTQSLSYEIDLREYLPEYGTGPRKFSFNELALATSNFSDGEKLGEGGFGGIFCRLRHRNLVRLMGWLVDHGKGFGIVWVWDLYGVGKLLEAADPRLSADYDDQQMERLMIVGLWCAHPDCNARPSMRQAISVLNSEALLPLLPIKMPVAMYYAPPALQTSYSTSLSERNHTQFSNSSNGTADSSKVSESSSTLSQSASLLHRR* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9739485 9744665 - Vvi3g833 Vvi3g833 784508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g833 391 Pfam Legume lectin domain 63 180 IPR001220 GO:0030246
Vvi3g833 391 Gene3D - 61 184 - -
Vvi3g833 391 SUPERFAMILY Protein kinase-like (PK-like) 206 272 IPR011009 -
Vvi3g833 391 PANTHER - 208 240 - -
Vvi3g833 391 PANTHER - 265 347 - -
Vvi3g833 391 PANTHER - 56 181 - -
Vvi3g833 391 MobiDBLite consensus disorder prediction 356 391 - -
Vvi3g833 391 SUPERFAMILY Protein kinase-like (PK-like) 264 359 IPR011009 -
Vvi3g833 391 PANTHER - 265 347 - -
Vvi3g833 391 PANTHER - 56 181 - -
Vvi3g833 391 PANTHER - 208 240 - -
Vvi3g833 391 Gene3D Transferase(Phosphotransferase) domain 1 256 342 - -
Vvi3g833 391 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 175 IPR013320 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g833 - - - vvi:100245063 267.314
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g833 . . . . Bpe07g00307 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00271 . . . . . . . . . . . . . . . . . . . . Bhi10g01654 . . . . . . Cla09g01668 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8