Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g835 ATGATCAGAATATTATTTTTTTTGTGCACTAATTACTGTTTGGATAAGTTATTCCAAAATTGCCATTTTGTTTTCCTTGTCAGTAGCCACCACGGTCTCTATGTAAGCAACCACGAGTCTCCAAAATTGCCCATAATGGGCAGGACTCTGTACTCAACCATGGGTGCTTGCAACACTCGTATGGAATCTCACAAACTTCTCTCCTTTCATCTCTTCATGATTTCCATTTTCTTCTTCCTAATATTCTTCCCTTCTGCAACTTCGTTGTCCTTCAACTTCTCTAGCTTTGGTTCAAATGACCATAATATATCCTTCGACGAAGCAGGAGACGCTGTATATTCTTCGGACGGATGCATCCAACTGACCAGAAACGAGAACGACAAGCAATCGAATGATAGTTGGGGTCGAGCCATGTATAGCGAGCGATTGTATCTCTGGGATCAGACCTCCAGAAATCTAACTGATTTCACTACCAATTTCTCCTTTGTCATCAATTCACAAGACCACAATCAGTATGCCGATGGACTTACGTTCTTCCTTAATGGTACCCAATTGCATACAGATACGTTGGGAGAAACTCTTGGTCTCGCCAACGAAAAGAATGAGACAAACAAAAGTGCCGTTACGGACAGTACCAATACTACACAAAGCCTCTCTTACAAAGTTGATCTGAGGGAATACTTGCCGGAATACAGGAATACTGAGAGAGATCAAGAAGACGGTGGTGACAGTGACCTGGACATGGACGAAGATTTTGAGAAGGGTACTGGACCGAGGAAGTTTTCCTTTAATGAATTGGCTCTTGCGACCAGTAACTTTTCAGAGGGAGAGAAGCTTGGAGAGGGAGGGTTTGGTGGGGTCTATAGAGGTTTCTTGCGAGAACTGAACTCTTATGTTGCAGTTAAGAGGGTAACAAGGAACTCCCAACAGGGGATGAAGGAGTACGCATCTGAAGTGAAGATCTTTTGTCGATTGAGGCACCGGAACTTGGTGCAGCTCATGGGCTGGTATAGAATTGCTCTAGGCTTGGCCTCTTCGCTTCTCGACCTCAGCACCCACAGCCCTCATGTATCTGCGCAACTGTGTTTCCAACCAAACACGACCTTCTGTCAGTTTGGTTTGAAATCATGTGAACCTTACGTCCTATTCATGATGGCACCTCAACTTTTCCTCTACAATACTTCCAAATTTTCTAGTCCAAGGCTTCAAATCATTGGTTTTACAATCCAACATTACATGTTGTTAAAACTCCAATTCTTAGGGTATGCATATTGA 1275 43.22 MIRILFFLCTNYCLDKLFQNCHFVFLVSSHHGLYVSNHESPKLPIMGRTLYSTMGACNTRMESHKLLSFHLFMISIFFFLIFFPSATSLSFNFSSFGSNDHNISFDEAGDAVYSSDGCIQLTRNENDKQSNDSWGRAMYSERLYLWDQTSRNLTDFTTNFSFVINSQDHNQYADGLTFFLNGTQLHTDTLGETLGLANEKNETNKSAVTDSTNTTQSLSYKVDLREYLPEYRNTERDQEDGGDSDLDMDEDFEKGTGPRKFSFNELALATSNFSEGEKLGEGGFGGVYRGFLRELNSYVAVKRVTRNSQQGMKEYASEVKIFCRLRHRNLVQLMGWYRIALGLASSLLDLSTHSPHVSAQLCFQPNTTFCQFGLKSCEPYVLFMMAPQLFLYNTSKFSSPRLQIIGFTIQHYMLLKLQFLGYAY* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9751599 9771387 - Vvi3g835 Vvi3g835 784510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g835 424 PANTHER - 75 204 - -
Vvi3g835 424 PANTHER - 237 337 - -
Vvi3g835 424 Pfam Legume lectin domain 88 205 IPR001220 GO:0030246
Vvi3g835 424 Pfam Protein kinase domain 274 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g835 424 SUPERFAMILY Concanavalin A-like lectins/glucanases 60 200 IPR013320 -
Vvi3g835 424 ProSiteProfiles Protein kinase domain profile. 273 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g835 424 ProSitePatterns Protein kinases ATP-binding region signature. 279 302 IPR017441 GO:0005524
Vvi3g835 424 Gene3D - 86 209 - -
Vvi3g835 424 Gene3D Phosphorylase Kinase; domain 1 258 340 - -
Vvi3g835 424 SUPERFAMILY Protein kinase-like (PK-like) 258 338 IPR011009 -
Vvi3g835 424 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 75 204 - -
Vvi3g835 424 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 237 337 - -
Vvi3g835 424 MobiDBLite consensus disorder prediction 230 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g835 - - - vvi:104878863 290.812
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g835 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00270 . . . . . . . . . . . . . . . . . . . . Bhi10g01653 . . . . . . Cla09g01633 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016599 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76580 PF00139 Lectin_legB 2.30E-27 CL0004 Vvi PK