Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g838 ATGGGAAGAGGGAAGATTGTGATCCGAAGGATCGATAATTCAACGAGCAGGCAAGTGACTTTCTCGAAACGAAGAAATGGATTGCTTAAGAAGGCTAAGGAGCTGTCAATACTATGTGATGCAGAAGTTGGCCTGGTCATCTTCTCCAGCACTGGCAAGCTTTATGATTATGCAAACACTAGCGTGAATTCCGTAATCGATCGATACAACAAATTGAAGGAGGAACAGCACCAAGTGTTGAACCCGGCTTCGGAAGTCAAGCTCTGGCAAAGGGAGGCAGCAAGCTTGAGGCAGCAACTACAATACTTGCAAGACACCCACAGGCAATTGCTGGGAGAAGAGCTTTCTGGTTTAGGCATCAAAGACCTACAGAATCTGGAAAACCAATTGGAAATGAGTTTGAAGGGAGTCCGAATGAAGAAGGAAAAAATTTTAACTGATGAAATAAGAGAATTAAACCAAAAGGGGAGCCTCATTCATCAAGAGAATATAGATCTCTACAAGAAGGTTGACCTCATCCGTCAAGAAAATATGGAATTGCAAAAGAAGGTATATCGAGCCGTAAATTTGAATGAATCAAACAGAAGTTCCCAGGTCTCACATGGTTTCAGCAATGGATTTGACTTACACGTGCCTATCAATCTCCAGTTAAGCCAGCCTCATAACAATGAAACACCAGAGAAAGCAATGGAACTAGGACTACAACTTCGTTAA 714 42.3 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVIFSSTGKLYDYANTSVNSVIDRYNKLKEEQHQVLNPASEVKLWQREAASLRQQLQYLQDTHRQLLGEELSGLGIKDLQNLENQLEMSLKGVRMKKEKILTDEIRELNQKGSLIHQENIDLYKKVDLIRQENMELQKKVYRAVNLNESNRSSQVSHGFSNGFDLHVPINLQLSQPHNNETPEKAMELGLQLR* 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9989269 10030836 + Vvi3g838 Vvi3g838 784513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g838 237 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi3g838 237 MobiDBLite consensus disorder prediction 218 237 - -
Vvi3g838 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi3g838 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 237 - -
Vvi3g838 237 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi3g838 237 PANTHER - 1 237 - -
Vvi3g838 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi3g838 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi3g838 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi3g838 237 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Vvi3g838 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi3g838 237 Coils Coil 86 106 - -
Vvi3g838 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi3g838 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi3g838 237 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Vvi3g838 237 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g838 Vvi18g1639 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14688 PF01486 K-box 4.30E-25 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g838 K09264 - vvi:100244955 454.907